myRT

myRT report for GCA_001022175.1_ASM102217v1

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Seq: CP011623.1 Klebsiella pneumoniae strain CAV1344 plasmid pCAV1344-250, complete sequence (250396 bp)
Overview 1 RT 1: 29518-35609 bp 2 RT 2: 42269-47612 bp Neighborhood of RT #1 [29518, 35701] InsE RVT-GII GIIM COG3547 Phage_integrase Neighborhood of RT #2 [42269, 47749] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 29518-29820 bp Ori: AKL27062.1 Feature: domain Description: InsE Location: 29527-29809 bp Feature: domain Description: InsE Location: 29527-29809 bp Feature: gene Location: 29940-30233 bp Feature: gene Location: 30879-32387 bp Ori: AKL27285.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31137-31869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 37-31 869 bp Feature: domain Description: GIIM Note: maturase Location: 31944-32142 bp Feature: domain Description: GIIM Note: maturase Location: 31 944-321 42 bp Feature: gene Location: 32929-34005 bp Ori: AKL27064.1 Feature: domain Description: COG3547 Location: 32968-33889 bp Feature: domain Description: COG3547 Location: 32968-33889 bp Feature: gene Location: 34961-35701 bp Ori: AKL27065.1 Feature: domain Description: Phage_integrase Location: 35093-35609 bp Feature: domain Description: Phage_integrase Location: 35093-35609 bp Feature: gene Location: 42269-43540 bp Ori: AKL27071.1 Feature: domain Description: umuC Location: 42272-43535 bp Feature: domain Description: umuC Location: 42272-43535 bp Feature: gene Location: 43540-43965 bp Ori: AKL27072.1 Feature: domain Description: PRK10276 Location: 43543-43951 bp Feature: domain Description: PRK1 0276 Location: 43543-43951 bp Feature: gene Location: 44371-45855 bp Ori: AKL27073.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44773-45463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44773-45463 bp Feature: gene Location: 46104-47075 bp Ori: AKL27074.1 Feature: domain Description: StbA Location: 46107-47052 bp Feature: domain Description: StbA Location: 461 07-47052 bp Feature: gene Location: 47078-47749 bp Ori: AKL27075.1 Feature: domain Description: Plasmid_stab_B Location: 47093-47300 bp Feature: domain Description: Plasmid_stab_B Location: 47093-47300 bp Feature: domain Description: Plasmid_stab_B Location: 47405-47612 bp Feature: domain Description: Plasmid_stab_B Location: 47405-4761 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), Phage_integrase (pfam00589), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP011624.1 Klebsiella pneumoniae strain CAV1344, complete genome (5262013 bp)
Overview 1 RT 1: 107107-112470 bp 2 RT 2: 207651-212171 bp 3 RT 3: 328214-333252 bp 4 RT 4: 1594850-1599888 bp 5 RT 5: 2875329-2881587 bp 6 RT 6: 4023146-4031935 bp Neighborhood of RT #1 [107107, 112526] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #2 [207651, 212173] PRK10598 PRK05451 RVT-GII PRK10597 bssS Neighborhood of RT #3 [328214, 333296] Psu RVT-GII DUF4868 Neighborhood of RT #4 [1594850, 1599932] Psu RVT-GII DUF4868 Neighborhood of RT #5 [2875329, 2881595] DUF5405 Phage_GPA RVT-GII DinI Dcm Neighborhood of RT #6 [4023146, 4031949] PRK00007 SbcB RVT-GII PRK10016 YccC Feature: gene Location: 107107-108372 bp Ori: AKL27399.1 Feature: domain Description: umuC Location: 107110-108370 bp Feature: domain Description: umuC Location: 107110-108370 bp Feature: gene Location: 108375-108794 bp Ori: AKL27400.1 Feature: domain Description: PRK10276 Location: 108378-108789 bp Feature: domain Description: PRK102 76 Location: 108378-108789 bp Feature: gene Location: 108873-110357 bp Ori: AKL27401.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109275-109965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1092 75-109965 bp Feature: gene Location: 110974-111216 bp Ori: AKL27402.1 Feature: domain Description: DinI Location: 111025-111205 bp Feature: domain Description: DinI Location: 11102 5-1112 05 bp Feature: gene Location: 111387-112526 bp Ori: AKL27403.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 111570-112470 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 111570-112 470 bp Feature: gene Location: 207651-208211 bp Ori: AKL27503.1 Feature: domain Description: PRK10598 Location: 207654-208209 bp Feature: domain Description: PRK10598 Location: 2 07654-2 082 09 bp Feature: gene Location: 208337-209383 bp Ori: AKL27504.1 Feature: domain Description: PRK05451 Location: 208352-209378 bp Feature: domain Description: PRK05451 Location: 2 08352 -2 09378 bp Feature: gene Location: 209476-210960 bp Ori: AKL27505.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209878-210568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 09878-2 10568 bp Feature: gene Location: 211365-211616 bp Ori: AKL27506.1 Feature: domain Description: PRK10597 Location: 211368-211605 bp Feature: domain Description: PRK10597 Location: 2 11368-2 11605 bp Feature: gene Location: 211919-212173 bp Ori: AKL27507.1 Gene: bssS Feature: domain Description: bssS Location: 211922-212171 bp Feature: domain Description: bssS Location: 2 1192 2 -2 12 171 bp Feature: gene Location: 328214-328780 bp Ori: AKL27616.1 Feature: domain Description: Psu Location: 328232-328772 bp Feature: domain Description: Psu Location: 32 82 32 -32 8772 bp Feature: gene Location: 329441-329752 bp Feature: gene Location: 329985-331469 bp Ori: AKL27618.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330387-331077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330387-331077 bp Feature: gene Location: 331879-332394 bp Feature: gene Location: 332403-333296 bp Ori: AKL27620.1 Feature: domain Description: DUF4868 Location: 332805-333252 bp Feature: domain Description: DUF4868 Location: 332 805-3332 52 bp Feature: gene Location: 1594850-1595416 bp Ori: AKL28755.1 Feature: domain Description: Psu Location: 1594868-1595408 bp Feature: domain Description: Psu Location: 1594868-1595408 bp Feature: gene Location: 1596077-1596388 bp Feature: gene Location: 1596621-1598105 bp Ori: AKL28757.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1597023-1597713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159702 3-1597713 bp Feature: gene Location: 1598515-1599030 bp Feature: gene Location: 1599039-1599932 bp Ori: AKL28759.1 Feature: domain Description: DUF4868 Location: 1599441-1599888 bp Feature: domain Description: DUF4868 Location: 1599441-1599888 bp Feature: gene Location: 2875329-2875610 bp Ori: AKL29925.1 Feature: domain Description: DUF5405 Location: 2875353-2875590 bp Feature: domain Description: DUF5405 Location: 2 875353-2 875590 bp Feature: gene Location: 2875603-2877834 bp Ori: AKL29926.1 Feature: domain Description: Phage_GPA Location: 2876029-2876971 bp Feature: domain Description: Phage_GPA Location: 2 87602 9-2 876971 bp Feature: gene Location: 2878292-2879776 bp Ori: AKL29927.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2878694-2879384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 878694-2 879384 bp Feature: gene Location: 2880064-2880294 bp Ori: AKL32263.1 Feature: domain Description: DinI Location: 2880109-2880292 bp Feature: domain Description: DinI Location: 2 880109-2 8802 92 bp Feature: gene Location: 2880567-2881595 bp Ori: AKL29928.1 Feature: domain Description: Dcm Location: 2880570-2881587 bp Feature: domain Description: Dcm Location: 2 880570-2 881587 bp Feature: gene Location: 4023146-4025248 bp Ori: AKL30975.1 Gene: fusA Feature: domain Description: PRK00007 Location: 4023149-4025240 bp Feature: domain Description: PRK00007 Location: 402 3149-402 52 40 bp Feature: gene Location: 4025466-4026890 bp Ori: AKL30976.1 Gene: sbcB Feature: domain Description: SbcB Location: 4025472-4026888 bp Feature: domain Description: SbcB Location: 402 5472 -402 6888 bp Feature: gene Location: 4028753-4030237 bp Ori: AKL30977.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4029155-4029845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402 9155-402 9845 bp Feature: gene Location: 4030319-4030792 bp Ori: AKL30978.1 Feature: domain Description: PRK10016 Location: 4030322-4030781 bp Feature: domain Description: PRK10016 Location: 403032 2 -4030781 bp Feature: gene Location: 4030891-4031949 bp Ori: AKL30979.1 Feature: domain Description: YccC Location: 4030897-4031935 bp Feature: domain Description: YccC Location: 4030897-4031935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), PRK10598 (lipoprotein; Provisional), PRK05451 (dihydroorotase; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional), bssS (PRK12301), Psu (pfam07455)
DUF4868 (pfam16162), DUF5405 (pfam17399), Phage_GPA (pfam05840), Dcm (COG0270), PRK00007 (elongation factor G; Reviewed), SbcB (COG2925), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289)