myRT

myRT report for GCA_001022235.1_ASM102223v1

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Seq: CP011647.1 Klebsiella pneumoniae strain CAV1596, complete genome (5402147 bp)
Overview 1 RT 1: 2514952-2518359 bp 2 RT 2: 2959176-2964724 bp 3 RT 3: 3302878-3308296 bp 4 RT 4: 4616694-4624751 bp 5 RT 5: 4728472-4734955 bp Neighborhood of RT #1 [2514952, 2518460] Laminin_G_3 RVT-GII PRK10276 PRK10276 Neighborhood of RT #2 [2959176, 2964750] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Neighborhood of RT #3 [3302878, 3308298] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #4 [4616694, 4624786] IS5 Nuc_deoxyrib_tr RVT-Retrons AAA_15 DUF4917 Neighborhood of RT #5 [4728472, 4734957] YccC PRK10016 RVT-GII dacD SbcB Feature: gene Location: 2514952-2515683 bp Ori: AKL46945.1 Feature: domain Description: Laminin_G_3 Location: 2515273-2515627 bp Feature: domain Description: Laminin_G_3 Location: 251 5273-251 5627 bp Feature: gene Location: 2515680-2515889 bp Feature: gene Location: 2516342-2517826 bp Ori: AKL46947.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2516744-2517434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 6744-251 7434 bp Feature: gene Location: 2517904-2518143 bp Feature: gene Location: 2518143-2518460 bp Ori: AKL46949.1 Feature: domain Description: PRK10276 Location: 2518149-2518263 bp Feature: domain Description: PRK1 0276 Location: 251 81 49-251 8263 bp Feature: domain Description: PRK10276 Location: 2518290-2518359 bp Feature: domain Description: PRK1 0276 Location: 251 8290-251 8359 bp Feature: gene Location: 2959176-2959739 bp Ori: AKL47348.1 Feature: domain Description: YbjK Location: 2959182-2959719 bp Feature: domain Description: YbjK Location: 29591 82-295971 9 bp Feature: gene Location: 2959862-2960914 bp Ori: AKL47349.1 Feature: domain Description: int Location: 2959865-2960864 bp Feature: domain Description: int Location: 2959865-2960864 bp Feature: gene Location: 2961333-2962817 bp Ori: AKL47350.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2961735-2962425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2961 735-2962425 bp Feature: gene Location: 2962916-2963860 bp Feature: gene Location: 2963872-2964750 bp Ori: AKL47352.1 Feature: domain Description: Phage_CI_repr Location: 2963899-2964082 bp Feature: domain Description: Phage_CI_repr Location: 2963899-2964082 bp Feature: domain Description: Phage_CI_repr Location: 2964211-2964403 bp Feature: domain Description: Phage_CI_repr Location: 296421 1 -2964403 bp Feature: domain Description: Phage_CI_C Location: 2964430-2964724 bp Feature: domain Description: Phage_CI_C Location: 2964430-2964724 bp Feature: gene Location: 3302878-3304017 bp Ori: AKL47676.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3303061-3303961 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3303061 -3303961 bp Feature: gene Location: 3304188-3304430 bp Ori: AKL47677.1 Feature: domain Description: DinI Location: 3304239-3304419 bp Feature: domain Description: DinI Location: 3304239-330441 9 bp Feature: gene Location: 3305048-3306532 bp Ori: AKL47678.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3305450-3306140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3305450-33061 40 bp Feature: gene Location: 3306611-3307030 bp Ori: AKL47679.1 Feature: domain Description: PRK10276 Location: 3306614-3307025 bp Feature: domain Description: PRK1 0276 Location: 330661 4-3307025 bp Feature: gene Location: 3307033-3308298 bp Ori: AKL47680.1 Feature: domain Description: umuC Location: 3307036-3308296 bp Feature: domain Description: umuC Location: 3307036-3308296 bp Feature: gene Location: 4616694-4617674 bp Ori: AKL48946.1 Feature: domain Description: IS5 Location: 4616883-4617660 bp Feature: domain Description: IS5 Location: 461 6883-461 7660 bp Feature: gene Location: 4617757-4618251 bp Ori: AKL49804.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 4617901-4618075 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 461 7901 -461 8075 bp Feature: gene Location: 4618907-4620007 bp Ori: AKL48947.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4619090-4619618 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 461 9090-461 961 8 bp Feature: gene Location: 4620122-4622368 bp Ori: AKL48948.1 Feature: domain Description: AAA_15 Location: 4620125-4621133 bp Feature: domain Description: AAA_1 5 Location: 46201 25-4621 1 33 bp Feature: gene Location: 4623767-4624786 bp Ori: AKL48949.1 Feature: domain Description: DUF4917 Location: 4623827-4624751 bp Feature: domain Description: DUF491 7 Location: 4623827-4624751 bp Feature: gene Location: 4728472-4729530 bp Ori: AKL49029.1 Feature: domain Description: YccC Location: 4728478-4729516 bp Feature: domain Description: YccC Location: 4728478-472951 6 bp Feature: gene Location: 4729629-4730102 bp Ori: AKL49030.1 Feature: domain Description: PRK10016 Location: 4729632-4730091 bp Feature: domain Description: PRK1 001 6 Location: 4729632-4730091 bp Feature: gene Location: 4730184-4731668 bp Ori: AKL49031.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4730586-4731276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4730586-4731 276 bp Feature: gene Location: 4732189-4733352 bp Ori: AKL49808.1 Feature: domain Description: dacD Location: 4732192-4733347 bp Feature: domain Description: dacD Location: 47321 92-4733347 bp Feature: gene Location: 4733533-4734957 bp Ori: AKL49032.1 Gene: sbcB Feature: domain Description: SbcB Location: 4733539-4734955 bp Feature: domain Description: SbcB Location: 4733539-4734955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), umuC (PRK03609)
IS5 (COG3039), Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175), DUF4917 (pfam16263), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925)

Seq: CP011644.1 Klebsiella pneumoniae strain CAV1596 plasmid pCAV1596-41, complete sequence (40939 bp)
Overview 1 RT 1: 11635-18235 bp Neighborhood of RT #1 [11635, 18768] umuC PRK10276 RVT-GII DDE_Tnp_IS1 DDE_Tnp_1_5 Feature: gene Location: 11635-12906 bp Ori: AKL44345.1 Feature: domain Description: umuC Location: 11638-12898 bp Feature: domain Description: umuC Location: 11638-12 898 bp Feature: gene Location: 12906-13337 bp Ori: AKL44346.1 Feature: domain Description: PRK10276 Location: 12957-13320 bp Feature: domain Description: PRK102 76 Location: 12 957-1332 0 bp Feature: gene Location: 13746-15230 bp Ori: AKL44347.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14148-14838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14148-14838 bp Feature: gene Location: 15576-16079 bp Ori: AKL44348.1 Feature: domain Description: DDE_Tnp_IS1 Location: 15687-16077 bp Feature: domain Description: DDE_Tnp_IS1 Location: 15687-16077 bp Feature: gene Location: 17845-18768 bp Ori: AKL44368.1 Feature: domain Description: DDE_Tnp_1_5 Location: 17902-18235 bp Feature: domain Description: DDE_Tnp_1_5 Location: 17902 -182 35 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DDE_Tnp_IS1 (pfam03400), DDE_Tnp_1_5 (pfam13737)