myRT

myRT report for GCA_001022295.1_ASM102229v1

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Seq: CP011596.1 Klebsiella oxytoca strain CAV1099 plasmid pCAV1099-114, complete sequence (113992 bp)
Overview 1 RT 1: 33559-38565 bp Neighborhood of RT #1 [33559, 38565] INT_Cre_C RVT-GII HHA Feature: gene Location: 33559-33876 bp Feature: gene Location: 33942-35078 bp Ori: AKL04050.1 Feature: domain Description: INT_Cre_C Location: 34365-35019 bp Feature: domain Description: INT_Cre_C Location: 34365-3501 9 bp Feature: gene Location: 35164-36648 bp Ori: AKL04051.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35566-36256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35566-36256 bp Feature: gene Location: 37164-37418 bp Ori: AKL04052.1 Feature: domain Description: HHA Location: 37215-37398 bp Feature: domain Description: HHA Location: 3721 5-37398 bp Feature: gene Location: 37504-38565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321)

Seq: CP011597.1 Klebsiella oxytoca strain CAV1099, complete genome (6217725 bp)
Overview 1 RT 1: 331107-335781 bp 2 RT 2: 890419-896748 bp 3 RT 3: 1227952-1232448 bp 4 RT 4: 2028510-2032491 bp 5 RT 5: 3676817-3682997 bp 6 RT 6: 5135317-5140298 bp 7 RT 7: 5517915-5532735 bp 8 RT 8: 6115762-6123959 bp Neighborhood of RT #1 [331107, 335783] RVT-GII PRK10276 umuC Neighborhood of RT #2 [890419, 896748] umuC PRK10276 RVT-GII RVT-GII Neighborhood of RT #3 [1227952, 1232450] PRK10598 PRK05451 RVT-GII PRK10597 bssS Neighborhood of RT #4 [2028510, 2032491] RVT-GII Neighborhood of RT #5 [3676817, 3682999] phn_DUF6 Acetyltransf_10 RVT-GII PRK08155 PRK08178 Neighborhood of RT #6 [5135317, 5140298] PinE RVT-GII Neighborhood of RT #7 [5517915, 5532737] COG4733 PRK09039 SMC_prok_B CBM_4_9 SMC_prok_B CBM_4_9 CBM_4_9 COG4733 Peptidase_S74 RVT-GII PRK10276 YejM Neighborhood of RT #8 [6115762, 6123961] PinE RVT-GII RVT-GII PRK10276 umuC Feature: gene Location: 331107-331340 bp Feature: gene Location: 331372-331632 bp Feature: gene Location: 332528-334012 bp Ori: AKL04415.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332930-333620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332 930-33362 0 bp Feature: gene Location: 334094-334513 bp Ori: AKL04416.1 Feature: domain Description: PRK10276 Location: 334097-334508 bp Feature: domain Description: PRK102 76 Location: 334097-334508 bp Feature: gene Location: 334515-335783 bp Ori: AKL04417.1 Feature: domain Description: umuC Location: 334518-335781 bp Feature: domain Description: umuC Location: 334518-335781 bp Feature: gene Location: 890419-891684 bp Ori: AKL04905.1 Feature: domain Description: umuC Location: 890422-891679 bp Feature: domain Description: umuC Location: 89042 2 -891679 bp Feature: gene Location: 891684-892106 bp Ori: AKL04906.1 Feature: domain Description: PRK10276 Location: 891687-892098 bp Feature: domain Description: PRK102 76 Location: 891687-892 098 bp Feature: gene Location: 892185-893669 bp Ori: AKL04907.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892587-893277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892 587-8932 77 bp Feature: gene Location: 894094-895578 bp Ori: AKL04908.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 894496-895186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 894496-895186 bp Feature: gene Location: 896208-896402 bp Feature: gene Location: 896557-896748 bp Feature: gene Location: 1227952-1228512 bp Ori: AKL05199.1 Feature: domain Description: PRK10598 Location: 1227955-1228510 bp Feature: domain Description: PRK10598 Location: 12 2 7955-12 2 8510 bp Feature: gene Location: 1228636-1229682 bp Ori: AKL05200.1 Feature: domain Description: PRK05451 Location: 1228651-1229677 bp Feature: domain Description: PRK05451 Location: 12 2 8651-12 2 9677 bp Feature: gene Location: 1229775-1231259 bp Ori: AKL05201.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1230177-1230867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 30177-12 30867 bp Feature: gene Location: 1231664-1231909 bp Ori: AKL05202.1 Feature: domain Description: PRK10597 Location: 1231667-1231904 bp Feature: domain Description: PRK10597 Location: 12 31667-12 31904 bp Feature: gene Location: 1232196-1232450 bp Ori: AKL05203.1 Gene: bssS Feature: domain Description: bssS Location: 1232199-1232448 bp Feature: domain Description: bssS Location: 12 32 199-12 32 448 bp Feature: gene Location: 2028510-2028836 bp Feature: gene Location: 2028836-2029075 bp Feature: gene Location: 2029154-2030638 bp Ori: AKL05869.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2029556-2030246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 9556-2 0302 46 bp Feature: gene Location: 2031091-2032491 bp Feature: gene Location: 3676817-3677650 bp Ori: AKL07266.1 Feature: domain Description: phn_DUF6 Location: 3676844-3677636 bp Feature: domain Description: phn_DUF6 Location: 3676844-3677636 bp Feature: gene Location: 3677721-3678167 bp Ori: AKL07267.1 Feature: domain Description: Acetyltransf_10 Location: 3677829-3678138 bp Feature: domain Description: Acetyltransf_10 Location: 367782 9-3678138 bp Feature: gene Location: 3678973-3680457 bp Ori: AKL07268.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3679375-3680065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3679375-3680065 bp Feature: gene Location: 3681017-3682705 bp Ori: AKL07269.1 Feature: domain Description: PRK08155 Location: 3681020-3682703 bp Feature: domain Description: PRK08155 Location: 368102 0-3682 703 bp Feature: gene Location: 3682709-3682999 bp Ori: AKL07270.1 Feature: domain Description: PRK08178 Location: 3682712-3682997 bp Feature: domain Description: PRK08178 Location: 3682 712 -3682 997 bp Feature: gene Location: 5135317-5137089 bp Feature: gene Location: 5137165-5137743 bp Ori: AKL08586.1 Feature: domain Description: PinE Location: 5137168-5137711 bp Feature: domain Description: PinE Location: 5137168-5137711 bp Feature: gene Location: 5138177-5139661 bp Ori: AKL08587.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5138579-5139269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5138579-51392 69 bp Feature: gene Location: 5139739-5139978 bp Feature: gene Location: 5139978-5140298 bp Feature: gene Location: 5517915-5527127 bp Ori: AKL08911.1 Feature: domain Description: COG4733 Location: 5517939-5520798 bp Feature: domain Description: COG4733 Location: 5517939-552 0798 bp Feature: domain Description: PRK09039 Location: 5521575-5521770 bp Feature: domain Description: PRK09039 Location: 552 1575-552 1770 bp Feature: domain Description: SMC_prok_B Location: 5522874-5523486 bp Feature: domain Description: SMC_prok_B Location: 552 2 874-552 3486 bp Feature: domain Description: CBM_4_9 Location: 5523687-5523903 bp Feature: domain Description: CBM_4_9 Location: 552 3687-552 3903 bp Feature: domain Description: SMC_prok_B Location: 5523990-5524218 bp Feature: domain Description: SMC_prok_B Location: 552 3990-552 42 18 bp Feature: domain Description: CBM_4_9 Location: 5524272-5524647 bp Feature: domain Description: CBM_4_9 Location: 552 42 72 -552 4647 bp Feature: domain Description: CBM_4_9 Location: 5524872-5525277 bp Feature: domain Description: CBM_4_9 Location: 552 4872 -552 52 77 bp Feature: domain Description: COG4733 Location: 5526210-5526795 bp Feature: domain Description: COG4733 Location: 552 62 10-552 6795 bp Feature: gene Location: 5527168-5528310 bp Ori: AKL08912.1 Feature: domain Description: Peptidase_S74 Location: 5527984-5528137 bp Feature: domain Description: Peptidase_S74 Location: 552 7984-552 8137 bp Feature: gene Location: 5528746-5530230 bp Ori: AKL08913.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5529148-5529838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 552 9148-552 9838 bp Feature: gene Location: 5530337-5530720 bp Ori: AKL08914.1 Feature: domain Description: PRK10276 Location: 5530343-5530685 bp Feature: domain Description: PRK102 76 Location: 5530343-5530685 bp Feature: gene Location: 5530977-5532737 bp Ori: AKL08915.1 Feature: domain Description: YejM Location: 5530980-5532735 bp Feature: domain Description: YejM Location: 5530980-5532 735 bp Feature: gene Location: 6115762-6116019 bp Feature: gene Location: 6117790-6118368 bp Ori: AKL09426.1 Feature: domain Description: PinE Location: 6117793-6118336 bp Feature: domain Description: PinE Location: 6117793-6118336 bp Feature: gene Location: 6118802-6120286 bp Ori: AKL09427.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6119204-6119894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61192 04-6119894 bp Feature: gene Location: 6120711-6122195 bp Ori: AKL09428.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6121113-6121803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 612 1113-612 1803 bp Feature: gene Location: 6122275-6122694 bp Ori: AKL09772.1 Feature: domain Description: PRK10276 Location: 6122278-6122689 bp Feature: domain Description: PRK102 76 Location: 612 2 2 78-612 2 689 bp Feature: gene Location: 6122696-6123961 bp Ori: AKL09429.1 Feature: domain Description: umuC Location: 6122699-6123959 bp Feature: domain Description: umuC Location: 612 2 699-612 3959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), PRK10598 (lipoprotein; Provisional), PRK05451 (dihydroorotase; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional), bssS (PRK12301), phn_DUF6 (TIGR03340), Acetyltransf_10 (pfam13673), PRK08155 (acetolactate synthase large subunit)
PRK08178 (acetolactate synthase 1 small subunit), PinE (COG1961), COG4733 (Phage-related protein, tail component ), PRK09039 (peptidoglycan -binding protein), SMC_prok_B (TIGR02168), CBM_4_9 (pfam02018), Peptidase_S74 (pfam13884), YejM (COG3083)