myRT

myRT report for GCA_001039495.1_ASM103949v1

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Seq: CP011939.1 Bacillus coagulans strain S-lac, complete genome (3694837 bp)
Overview 1 RT 1: 96234-101775 bp 2 RT 2: 566943-574629 bp 3 RT 3: 1383603-1391551 bp 4 RT 4: 1741024-1744240 bp 5 RT 5: 2271270-2276850 bp 6 RT 6: 2312176-2318584 bp 7 RT 7: 2424583-2429211 bp 8 RT 8: 2830233-2837151 bp 9 RT 9: 2979235-2985203 bp 10 RT 10: 3221939-3227015 bp 11 RT 11: 3335673-3341026 bp Neighborhood of RT #1 [96234, 101775] spore_yhbH spore_yhbH RVT-GII GIIM PrkA Neighborhood of RT #2 [566943, 574646] DEDD_Tnp_IS110 COG3547 YbbC RVT-GII GIIM Prok-TraM MdlB Neighborhood of RT #3 [1383603, 1391616] UPF0236 HMG-CoA_reductase_classII RVT-GII GIIM HMG-CoA-S_prok UPF0236 Neighborhood of RT #4 [1741024, 1744240] yflN-like_MBL-fold RVT-GII GIIM Neighborhood of RT #5 [2271270, 2276873] PRK03584 RVT-GII GIIM ChrA ChrA Neighborhood of RT #6 [2312176, 2318649] PRK11360 prfC RVT-GII GIIM R_switched_YkoY Neighborhood of RT #7 [2424583, 2429234] rluA_subfam PyrR RVT-GII GIIM pyrB Neighborhood of RT #8 [2830233, 2837156] FACL_FadD13-like RTP RVT-GII GIIM PucG AllC Neighborhood of RT #9 [2979235, 2985217] nth DnaD RVT-GII GIIM asnC PRK05764 Neighborhood of RT #10 [3221939, 3227017] PRK05803 RVT-GII GIIM AhpF AhpC Neighborhood of RT #11 [3335673, 3341026] tig TPR RVT-GII GIIM DUF2512 Feature: gene Location: 96234-97025 bp Ori: AKN52516.1 Feature: domain Description: spore_yhbH Location: 96237-96996 bp Feature: domain Description: spore_yhbH Location: 96237-96996 bp Feature: gene Location: 97025-97399 bp Ori: AKN52517.1 Feature: domain Description: spore_yhbH Location: 97052-97340 bp Feature: domain Description: spore_yhbH Location: 97052-97340 bp Feature: gene Location: 97664-99073 bp Ori: AKN52518.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 98012-98627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9801 2-98627 bp Feature: domain Description: GIIM Note: maturase Location: 98681-98900 bp Feature: domain Description: GIIM Note: maturase Location: 98681 -98900 bp Feature: gene Location: 99519-101414 bp Ori: AKN52519.1 Feature: domain Description: PrkA Location: 99522-101409 bp Feature: domain Description: PrkA Location: 99522-1 01 409 bp Feature: gene Location: 101617-101775 bp Feature: gene Location: 566943-568166 bp Ori: AKN53009.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 566958-567429 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 566958-567429 bp Feature: domain Description: COG3547 Location: 567663-568116 bp Feature: domain Description: COG3547 Location: 567663-5681 1 6 bp Feature: gene Location: 568578-569846 bp Ori: AKN53010.1 Feature: domain Description: YbbC Location: 568599-569835 bp Feature: domain Description: YbbC Location: 568599-569835 bp Feature: gene Location: 569922-571331 bp Ori: AKN53011.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570270-570885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570270-570885 bp Feature: domain Description: GIIM Note: maturase Location: 570939-571158 bp Feature: domain Description: GIIM Note: maturase Location: 570939-571 1 58 bp Feature: gene Location: 571965-572291 bp Ori: AKN53012.1 Feature: domain Description: Prok-TraM Location: 572016-572232 bp Feature: domain Description: Prok-TraM Location: 57201 6-572232 bp Feature: gene Location: 572784-574646 bp Ori: AKN53013.1 Feature: domain Description: MdlB Location: 572913-574629 bp Feature: domain Description: MdlB Location: 57291 3-574629 bp Feature: gene Location: 1383603-1385018 bp Ori: AKN53846.1 Feature: domain Description: UPF0236 Location: 1383615-1384950 bp Feature: domain Description: UPF0236 Location: 1 38361 5-1 384950 bp Feature: gene Location: 1385396-1386685 bp Ori: AKN53847.1 Feature: domain Description: HMG-CoA_reductase_classII Location: 1385417-1386680 bp Feature: domain Description: HMG-CoA_reductase_classII Location: 1 38541 7-1 386680 bp Feature: gene Location: 1387396-1388805 bp Ori: AKN53848.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1387744-1388359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 387744-1 388359 bp Feature: domain Description: GIIM Note: maturase Location: 1388413-1388629 bp Feature: domain Description: GIIM Note: maturase Location: 1 38841 3-1 388629 bp Feature: gene Location: 1388873-1390057 bp Ori: AKN53849.1 Feature: domain Description: HMG-CoA-S_prok Location: 1388882-1390028 bp Feature: domain Description: HMG-CoA-S_prok Location: 1 388882-1 390028 bp Feature: gene Location: 1390201-1391616 bp Ori: AKN53850.1 Feature: domain Description: UPF0236 Location: 1390213-1391551 bp Feature: domain Description: UPF0236 Location: 1 39021 3-1 391 551 bp Feature: gene Location: 1741024-1741179 bp Feature: gene Location: 1741257-1741994 bp Ori: AKN54221.1 Feature: domain Description: yflN-like_MBL-fold Location: 1741302-1741944 bp Feature: domain Description: yflN-like_MBL-fold Location: 1 741 302-1 741 944 bp Feature: gene Location: 1742435-1743844 bp Ori: AKN54222.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1742783-1743398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 742783-1 743398 bp Feature: domain Description: GIIM Note: maturase Location: 1743452-1743671 bp Feature: domain Description: GIIM Note: maturase Location: 1 743452-1 743671 bp Feature: gene Location: 1743912-1744127 bp Feature: gene Location: 1744124-1744240 bp Feature: gene Location: 2271270-2271479 bp Feature: gene Location: 2271777-2273768 bp Ori: AKN54830.1 Feature: domain Description: PRK03584 Location: 2271801-2273739 bp Feature: domain Description: PRK03584 Location: 2271 801 -2273739 bp Feature: gene Location: 2274213-2275637 bp Ori: AKN54831.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2274561-2275176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2274561 -22751 76 bp Feature: domain Description: GIIM Note: maturase Location: 2275230-2275452 bp Feature: domain Description: GIIM Note: maturase Location: 2275230-2275452 bp Feature: gene Location: 2275738-2276277 bp Ori: AKN54832.1 Feature: domain Description: ChrA Location: 2275744-2276260 bp Feature: domain Description: ChrA Location: 2275744-2276260 bp Feature: gene Location: 2276274-2276873 bp Ori: AKN54833.1 Feature: domain Description: ChrA Location: 2276289-2276850 bp Feature: domain Description: ChrA Location: 2276289-2276850 bp Feature: gene Location: 2312176-2313252 bp Ori: AKN54880.1 Feature: domain Description: PRK11360 Location: 2312248-2313214 bp Feature: domain Description: PRK1 1 360 Location: 231 2248-231 321 4 bp Feature: gene Location: 2313469-2315037 bp Ori: AKN54881.1 Feature: domain Description: prfC Location: 2313484-2315026 bp Feature: domain Description: prfC Location: 231 3484-231 5026 bp Feature: gene Location: 2315479-2316888 bp Ori: AKN54882.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2315827-2316442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 5827-231 6442 bp Feature: domain Description: GIIM Note: maturase Location: 2316496-2316715 bp Feature: domain Description: GIIM Note: maturase Location: 231 6496-231 671 5 bp Feature: gene Location: 2317051-2317521 bp Feature: gene Location: 2317846-2318649 bp Ori: AKN54884.1 Feature: domain Description: R_switched_YkoY Location: 2317897-2318584 bp Feature: domain Description: R_switched_YkoY Location: 231 7897-231 8584 bp Feature: gene Location: 2424583-2425494 bp Ori: AKN55030.1 Feature: domain Description: rluA_subfam Location: 2424616-2425483 bp Feature: domain Description: rluA_subfam Location: 242461 6-2425483 bp Feature: gene Location: 2425665-2426207 bp Ori: AKN55031.1 Feature: domain Description: PyrR Location: 2425674-2426199 bp Feature: domain Description: PyrR Location: 2425674-24261 99 bp Feature: gene Location: 2426691-2428100 bp Ori: AKN55032.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2427039-2427654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2427039-2427654 bp Feature: domain Description: GIIM Note: maturase Location: 2427708-2427927 bp Feature: domain Description: GIIM Note: maturase Location: 2427708-2427927 bp Feature: gene Location: 2428176-2428343 bp Feature: gene Location: 2428335-2429234 bp Ori: AKN55034.1 Feature: domain Description: pyrB Location: 2428338-2429211 bp Feature: domain Description: pyrB Location: 2428338-242921 1 bp Feature: gene Location: 2830233-2831741 bp Ori: AKN55486.1 Feature: domain Description: FACL_FadD13-like Location: 2830257-2831709 bp Feature: domain Description: FACL_FadD1 3-like Location: 2830257-2831 709 bp Feature: gene Location: 2832148-2832525 bp Ori: AKN55487.1 Feature: domain Description: RTP Location: 2832181-2832520 bp Feature: domain Description: RTP Location: 28321 81 -2832520 bp Feature: gene Location: 2832965-2834374 bp Ori: AKN55488.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2833313-2833928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 283331 3-2833928 bp Feature: domain Description: GIIM Note: maturase Location: 2833982-2834201 bp Feature: domain Description: GIIM Note: maturase Location: 2833982-2834201 bp Feature: gene Location: 2834637-2835917 bp Ori: AKN55489.1 Feature: domain Description: PucG Location: 2834691-2835885 bp Feature: domain Description: PucG Location: 2834691 -2835885 bp Feature: gene Location: 2835918-2837156 bp Ori: AKN55490.1 Feature: domain Description: AllC Location: 2835954-2837151 bp Feature: domain Description: AllC Location: 2835954-28371 51 bp Feature: gene Location: 2979235-2979894 bp Ori: AKN55665.1 Feature: domain Description: nth Location: 2979250-2979823 bp Feature: domain Description: nth Location: 2979250-2979823 bp Feature: gene Location: 2979942-2980637 bp Ori: AKN55666.1 Feature: domain Description: DnaD Location: 2979951-2980635 bp Feature: domain Description: DnaD Location: 2979951 -2980635 bp Feature: gene Location: 2981147-2982556 bp Ori: AKN55667.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2981495-2982110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2981 495-29821 1 0 bp Feature: domain Description: GIIM Note: maturase Location: 2982164-2982383 bp Feature: domain Description: GIIM Note: maturase Location: 29821 64-2982383 bp Feature: gene Location: 2982642-2983973 bp Ori: AKN55668.1 Feature: domain Description: asnC Location: 2982693-2983968 bp Feature: domain Description: asnC Location: 2982693-2983968 bp Feature: gene Location: 2984030-2985217 bp Ori: AKN55669.1 Feature: domain Description: PRK05764 Location: 2984033-2985203 bp Feature: domain Description: PRK05764 Location: 2984033-2985203 bp Feature: gene Location: 3221939-3222664 bp Ori: AKN55970.1 Feature: domain Description: PRK05803 Location: 3221948-3222635 bp Feature: domain Description: PRK05803 Location: 3221 948-3222635 bp Feature: gene Location: 3222727-3222927 bp Feature: gene Location: 3223018-3224427 bp Ori: AKN55972.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3223366-3223981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3223366-3223981 bp Feature: domain Description: GIIM Note: maturase Location: 3224035-3224254 bp Feature: domain Description: GIIM Note: maturase Location: 3224035-3224254 bp Feature: gene Location: 3224883-3226439 bp Ori: AKN55973.1 Feature: domain Description: AhpF Location: 3224889-3226419 bp Feature: domain Description: AhpF Location: 3224889-322641 9 bp Feature: gene Location: 3226454-3227017 bp Ori: AKN55974.1 Feature: domain Description: AhpC Location: 3226457-3227015 bp Feature: domain Description: AhpC Location: 3226457-322701 5 bp Feature: gene Location: 3335673-3336959 bp Ori: AKN56090.1 Feature: domain Description: tig Location: 3335676-3336951 bp Feature: domain Description: tig Location: 3335676-3336951 bp Feature: gene Location: 3337123-3338115 bp Ori: AKN56091.1 Feature: domain Description: TPR Location: 3337177-3337456 bp Feature: domain Description: TPR Location: 33371 77-3337456 bp Feature: gene Location: 3338290-3339699 bp Ori: AKN56092.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3338638-3339253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3338638-3339253 bp Feature: domain Description: GIIM Note: maturase Location: 3339307-3339526 bp Feature: domain Description: GIIM Note: maturase Location: 3339307-3339526 bp Feature: gene Location: 3340152-3340595 bp Ori: AKN56093.1 Feature: domain Description: DUF2512 Location: 3340155-3340560 bp Feature: domain Description: DUF251 2 Location: 33401 55-3340560 bp Feature: gene Location: 3340730-3341026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spore_yhbH (TIGR02877), RVT-GII, GIIM (pfam08388), PrkA (pfam06798), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), YbbC (COG3876), Prok-TraM (pfam09228), MdlB (COG1132), UPF0236 (pfam06782)
HMG-CoA_reductase_classII (cd00644), HMG-CoA-S_prok (TIGR01835), yflN-like_MBL-fold (cd07721), PRK03584 (acetoacetate--CoA ligase), ChrA (COG2059), PRK11360 (two-component system sensor histidine kinase AtoS), prfC (TIGR00503), R_switched_YkoY (TIGR03716), rluA_subfam (TIGR00005), PyrR (COG2065)
pyrB (PRK13814), FACL_FadD13-like (cd17631), RTP (pfam02334), PucG (COG0075), AllC (TIGR03176), nth (TIGR01083), DnaD (COG3935), asnC (PRK03932), PRK05764 (aspartate aminotransferase; Provisional), PRK05803 (RNA polymerase sporulation sigma factor SigK)
AhpF (TIGR03140), AhpC (TIGR03137), tig (TIGR00115), TPR (smart00028), DUF2512 (pfam10710)