myRT

myRT report for GCA_001045415.1_ASM104541v1

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Seq: CP007653.1 Vibrio cholerae strain TSY216 chromosome 1, complete sequence (3053204 bp)
Overview 1 RT 1: 2524062-2529573 bp Neighborhood of RT #1 [2524062, 2529573] LysR PRK10621 RVT-Retrons TIGR02646 Feature: gene Location: 2524062-2524922 bp Ori: AKO75852.1 Feature: domain Description: LysR Location: 2524068-2524896 bp Feature: domain Description: LysR Location: 2524068-2524896 bp Feature: gene Location: 2524852-2525637 bp Ori: AKO75853.1 Feature: domain Description: PRK10621 Location: 2524861-2525632 bp Feature: domain Description: PRK1 0621 Location: 2524861 -2525632 bp Feature: gene Location: 2526123-2527070 bp Ori: AKO75854.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2526237-2526834 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2526237-2526834 bp Feature: gene Location: 2528705-2529322 bp Ori: AKO75855.1 Feature: domain Description: TIGR02646 Location: 2528816-2529200 bp Feature: domain Description: TIGR02646 Location: 252881 6-2529200 bp Feature: gene Location: 2529427-2529573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), PRK10621 (hypothetical protein; Provisional), RVT-Retrons, TIGR02646 (TIGR02646 family protein)

Seq: CP007655.1 Vibrio cholerae strain TSY216 chromosome 3, complete sequence (896006 bp)
Overview 1 RT 1: 387474-393971 bp 2 RT 2: 781632-787434 bp Neighborhood of RT #1 [387474, 393971] InsQ RVT-GII Intron_maturas2 HNHc InsQ Neighborhood of RT #2 [781632, 787478] InsQ RVT-GII Intron_maturas2 HNHc InsQ Peptidase_S24_S26 Feature: gene Location: 387474-388136 bp Feature: gene Location: 388496-389902 bp Ori: AKO77650.1 Feature: domain Description: InsQ Location: 388511-389390 bp Feature: domain Description: InsQ Location: 388511-389390 bp Feature: gene Location: 389896-391800 bp Ori: AKO77651.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390172-391048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390172 -391048 bp Feature: domain Description: Intron_maturas2 Location: 391132-391480 bp Feature: domain Description: Intron_maturas2 Location: 391132 -391480 bp Feature: domain Description: HNHc Note: nucleases Location: 391582-391726 bp Feature: domain Description: HNHc Note: nucleases Location: 391582 -39172 6 bp Feature: gene Location: 391905-392267 bp Ori: AKO77652.1 Feature: domain Description: InsQ Location: 391914-392253 bp Feature: domain Description: InsQ Location: 391914-392 2 53 bp Feature: gene Location: 392724-393971 bp Feature: gene Location: 781632-782765 bp Feature: gene Location: 783013-783375 bp Ori: AKO78112.1 Feature: domain Description: InsQ Location: 783022-783361 bp Feature: domain Description: InsQ Location: 78302 2 -783361 bp Feature: gene Location: 783480-785384 bp Ori: AKO78113.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 783756-784632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 783756-784632 bp Feature: domain Description: Intron_maturas2 Location: 784716-785064 bp Feature: domain Description: Intron_maturas2 Location: 784716-785064 bp Feature: domain Description: HNHc Note: nucleases Location: 785166-785310 bp Feature: domain Description: HNHc Note: nucleases Location: 785166-785310 bp Feature: gene Location: 785378-786784 bp Ori: AKO78114.1 Feature: domain Description: InsQ Location: 785393-786272 bp Feature: domain Description: InsQ Location: 785393-7862 72 bp Feature: gene Location: 787173-787478 bp Ori: AKO78115.1 Feature: domain Description: Peptidase_S24_S26 Location: 787233-787434 bp Feature: domain Description: Peptidase_S2 4_S2 6 Location: 7872 33-787434 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsQ (COG0675), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Peptidase_S24_S26 (cl10465)