myRT

myRT report for GCA_001046835.1_ASM104683v1

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Seq: CP011024.1 Lactobacillus reuteri strain IRT, complete genome (1993967 bp)
Overview 1 RT 1: 111989-118573 bp 2 RT 2: 263711-269837 bp 3 RT 3: 282267-287447 bp 4 RT 4: 557907-563217 bp 5 RT 5: 760007-764952 bp 6 RT 6: 1005225-1010351 bp 7 RT 7: 1030616-1036535 bp 8 RT 8: 1087423-1095868 bp 9 RT 9: 1191333-1196053 bp 10 RT 10: 1296805-1304081 bp 11 RT 11: 1394188-1404070 bp 12 RT 12: 1475452-1483158 bp Neighborhood of RT #1 [111989, 118692] SsuE COG2461 ApbE RVT-GII GIIM YSIRK_signal Tra8 Neighborhood of RT #2 [263711, 269842] PRK02363 pyrG RVT-GII GIIM PRK12830 rpmE2 Neighborhood of RT #3 [282267, 287455] Glutaminase RAYT RVT-GII GIIM LTA_DltD PRK05087 Neighborhood of RT #4 [557907, 563219] RAYT oxalate_frc RVT-GII GIIM AzgA rpsD Neighborhood of RT #5 [760007, 764963] AAK_UMPK-PyrH-Ec frr RVT-GII GIIM RAYT PRK14830 Neighborhood of RT #6 [1005225, 1010353] DUF915 Acetyltransf_1 RVT-GII GIIM PRK05313 ACT_1ZPV Neighborhood of RT #7 [1030616, 1036555] Endonuclease_NS PLDc_Bfil_DEXD_like ABC_PhnC_transporter RVT-GII GIIM DUF454 DUF3290 Neighborhood of RT #8 [1087423, 1095891] zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII GIIM YSIRK_signal MBG MBG MBG MBG MBG MBG Gram_pos_anchor Tra8 Neighborhood of RT #9 [1191333, 1196124] PRK10703 PBP1_GalR RVT-GII GIIM Ape1-like_AP-endo NTP-PPase_u3 Neighborhood of RT #10 [1296805, 1304947] Tas GT4_GtfA-like RVT-GII GIIM Mub_B2 Mub_B2 PT Gram_pos_anchor YSIRK_signal Neighborhood of RT #11 [1394188, 1404075] KxYKxGKxW COG5263 COG5263 COG5263 glucan_65_rpt Glyco_hydro_70 COG5263 Spr RVT-GII GIIM RAYT prfC Neighborhood of RT #12 [1475452, 1483244] P-type_ATPase_HM YjhB RVT-GII GIIM nicotinamidase_related hsdR HsdR Feature: gene Location: 111989-113239 bp Ori: AKP00317.1 Feature: domain Description: SsuE Location: 111992-112517 bp Feature: domain Description: SsuE Location: 1 1 1 992-1 1 251 7 bp Feature: domain Description: COG2461 Location: 112577-112955 bp Feature: domain Description: COG2461 Location: 1 1 2577-1 1 2955 bp Feature: gene Location: 113242-114168 bp Ori: AKP00318.1 Feature: domain Description: ApbE Location: 113266-114145 bp Feature: domain Description: ApbE Location: 1 1 3266-1 1 41 45 bp Feature: gene Location: 114666-116048 bp Ori: AKP00319.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114984-115602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 4984-1 1 5602 bp Feature: domain Description: GIIM Note: maturase Location: 115656-115884 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 5656-1 1 5884 bp Feature: gene Location: 116313-118136 bp Ori: AKP00320.1 Feature: domain Description: YSIRK_signal Location: 116349-116451 bp Feature: domain Description: YSIRK_signal Location: 1 1 6349-1 1 6451 bp Feature: gene Location: 118213-118692 bp Ori: AKP00321.1 Feature: domain Description: Tra8 Location: 118216-118573 bp Feature: domain Description: Tra8 Location: 1 1 821 6-1 1 8573 bp Feature: gene Location: 263711-264268 bp Ori: AKP00456.1 Feature: domain Description: PRK02363 Location: 263747-264263 bp Feature: domain Description: PRK02363 Location: 263747-264263 bp Feature: gene Location: 264444-266048 bp Ori: AKP00457.1 Feature: domain Description: pyrG Location: 264447-266043 bp Feature: domain Description: pyrG Location: 264447-266043 bp Feature: gene Location: 266561-267943 bp Ori: AKP00458.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266879-267497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 266879-267497 bp Feature: domain Description: GIIM Note: maturase Location: 267551-267779 bp Feature: domain Description: GIIM Note: maturase Location: 267551 -267779 bp Feature: gene Location: 268227-269504 bp Ori: AKP00459.1 Feature: domain Description: PRK12830 Location: 268230-269478 bp Feature: domain Description: PRK1 2830 Location: 268230-269478 bp Feature: gene Location: 269597-269842 bp Ori: AKP00460.1 Feature: domain Description: rpmE2 Location: 269600-269837 bp Feature: domain Description: rpmE2 Location: 269600-269837 bp Feature: gene Location: 282267-283208 bp Ori: AKP00473.1 Feature: domain Description: Glutaminase Location: 282348-283200 bp Feature: domain Description: Glutaminase Location: 282348-283200 bp Feature: gene Location: 283354-283812 bp Ori: AKP00474.1 Feature: domain Description: RAYT Location: 283372-283753 bp Feature: domain Description: RAYT Location: 283372-283753 bp Feature: gene Location: 284468-285850 bp Ori: AKP00475.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284786-285401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 284786-285401 bp Feature: domain Description: GIIM Note: maturase Location: 285458-285686 bp Feature: domain Description: GIIM Note: maturase Location: 285458-285686 bp Feature: gene Location: 285934-287223 bp Ori: AKP00476.1 Feature: domain Description: LTA_DltD Location: 285967-287104 bp Feature: domain Description: LTA_DltD Location: 285967-2871 04 bp Feature: gene Location: 287216-287455 bp Ori: AKP00477.1 Feature: domain Description: PRK05087 Location: 287219-287447 bp Feature: domain Description: PRK05087 Location: 28721 9-287447 bp Feature: gene Location: 557907-558365 bp Ori: AKP00736.1 Feature: domain Description: RAYT Location: 557925-558306 bp Feature: domain Description: RAYT Location: 557925-558306 bp Feature: gene Location: 558507-559010 bp Ori: AKP00737.1 Feature: domain Description: oxalate_frc Location: 558513-558960 bp Feature: domain Description: oxalate_frc Location: 55851 3-558960 bp Feature: gene Location: 559517-560899 bp Ori: AKP00738.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559835-560453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 559835-560453 bp Feature: domain Description: GIIM Note: maturase Location: 560507-560735 bp Feature: domain Description: GIIM Note: maturase Location: 560507-560735 bp Feature: gene Location: 561148-562482 bp Ori: AKP00739.1 Feature: domain Description: AzgA Location: 561175-562459 bp Feature: domain Description: AzgA Location: 561 1 75-562459 bp Feature: gene Location: 562614-563219 bp Ori: AKP00740.1 Feature: domain Description: rpsD Location: 562617-563217 bp Feature: domain Description: rpsD Location: 56261 7-56321 7 bp Feature: gene Location: 760007-760729 bp Ori: AKP00926.1 Feature: domain Description: AAK_UMPK-PyrH-Ec Location: 760028-760721 bp Feature: domain Description: AAK_UMPK-PyrH-Ec Location: 760028-760721 bp Feature: gene Location: 760734-761297 bp Ori: AKP00927.1 Feature: domain Description: frr Location: 760749-761292 bp Feature: domain Description: frr Location: 760749-761 292 bp Feature: gene Location: 761793-762965 bp Ori: AKP00928.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 762111-762729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7621 1 1 -762729 bp Feature: domain Description: GIIM Note: maturase Location: 762783-762960 bp Feature: domain Description: GIIM Note: maturase Location: 762783-762960 bp Feature: gene Location: 763424-763882 bp Ori: AKP00929.1 Feature: domain Description: RAYT Location: 763442-763823 bp Feature: domain Description: RAYT Location: 763442-763823 bp Feature: gene Location: 764199-764963 bp Ori: AKP00930.1 Feature: domain Description: PRK14830 Location: 764208-764952 bp Feature: domain Description: PRK1 4830 Location: 764208-764952 bp Feature: gene Location: 1005225-1006070 bp Ori: AKP01178.1 Feature: domain Description: DUF915 Location: 1005324-1006068 bp Feature: domain Description: DUF91 5 Location: 1 005324-1 006068 bp Feature: gene Location: 1006230-1006754 bp Ori: AKP01179.1 Feature: domain Description: Acetyltransf_1 Location: 1006350-1006677 bp Feature: domain Description: Acetyltransf_1 Location: 1 006350-1 006677 bp Feature: gene Location: 1006842-1008224 bp Ori: AKP01180.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1007160-1007778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0071 60-1 007778 bp Feature: domain Description: GIIM Note: maturase Location: 1007832-1008060 bp Feature: domain Description: GIIM Note: maturase Location: 1 007832-1 008060 bp Feature: gene Location: 1008719-1010062 bp Ori: AKP01181.1 Feature: domain Description: PRK05313 Location: 1008722-1010060 bp Feature: domain Description: PRK0531 3 Location: 1 008722-1 01 0060 bp Feature: gene Location: 1010087-1010353 bp Ori: AKP01182.1 Feature: domain Description: ACT_1ZPV Location: 1010093-1010351 bp Feature: domain Description: ACT_1 ZPV Location: 1 01 0093-1 01 0351 bp Feature: gene Location: 1030616-1031470 bp Ori: AKP01202.1 Feature: domain Description: Endonuclease_NS Location: 1030901-1031402 bp Feature: domain Description: Endonuclease_NS Location: 1 030901 -1 031 402 bp Feature: gene Location: 1031649-1033973 bp Ori: AKP01203.1 Feature: domain Description: PLDc_Bfil_DEXD_like Location: 1031718-1032144 bp Feature: domain Description: PLDc_Bfil_DEXD_like Location: 1 031 71 8-1 0321 44 bp Feature: domain Description: ABC_PhnC_transporter Location: 1032951-1033032 bp Feature: domain Description: ABC_PhnC_transporter Location: 1 032951 -1 033032 bp Feature: gene Location: 1034057-1035439 bp Ori: AKP01204.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1034375-1034993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 034375-1 034993 bp Feature: domain Description: GIIM Note: maturase Location: 1035047-1035275 bp Feature: domain Description: GIIM Note: maturase Location: 1 035047-1 035275 bp Feature: gene Location: 1035924-1036193 bp Ori: AKP01205.1 Feature: domain Description: DUF454 Location: 1035951-1036122 bp Feature: domain Description: DUF454 Location: 1 035951 -1 0361 22 bp Feature: gene Location: 1036310-1036555 bp Ori: AKP01206.1 Feature: domain Description: DUF3290 Location: 1036316-1036535 bp Feature: domain Description: DUF3290 Location: 1 03631 6-1 036535 bp Feature: gene Location: 1087423-1087905 bp Ori: AKP01266.1 Feature: domain Description: zf-ISL3 Location: 1087558-1087678 bp Feature: domain Description: zf-ISL3 Location: 1 087558-1 087678 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1087720-1087858 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 1 087720-1 087858 bp Feature: gene Location: 1087969-1088475 bp Ori: AKP01267.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 1087981-1088464 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 087981 -1 088464 bp Feature: gene Location: 1088707-1090089 bp Ori: AKP01268.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089025-1089643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 089025-1 089643 bp Feature: domain Description: GIIM Note: maturase Location: 1089697-1089925 bp Feature: domain Description: GIIM Note: maturase Location: 1 089697-1 089925 bp Feature: gene Location: 1090684-1094352 bp Ori: AKP01269.1 Feature: domain Description: YSIRK_signal Location: 1090735-1090807 bp Feature: domain Description: YSIRK_signal Location: 1 090735-1 090807 bp Feature: domain Description: MBG Location: 1092418-1092667 bp Feature: domain Description: MBG Location: 1 09241 8-1 092667 bp Feature: domain Description: MBG Location: 1092706-1092955 bp Feature: domain Description: MBG Location: 1 092706-1 092955 bp Feature: domain Description: MBG Location: 1092994-1093243 bp Feature: domain Description: MBG Location: 1 092994-1 093243 bp Feature: domain Description: MBG Location: 1093282-1093531 bp Feature: domain Description: MBG Location: 1 093282-1 093531 bp Feature: domain Description: MBG Location: 1093570-1093819 bp Feature: domain Description: MBG Location: 1 093570-1 09381 9 bp Feature: domain Description: MBG Location: 1093861-1094116 bp Feature: domain Description: MBG Location: 1 093861 -1 0941 1 6 bp Feature: domain Description: Gram_pos_anchor Location: 1094230-1094347 bp Feature: domain Description: Gram_pos_anchor Location: 1 094230-1 094347 bp Feature: gene Location: 1095235-1095891 bp Ori: AKP01270.1 Feature: domain Description: Tra8 Location: 1095244-1095868 bp Feature: domain Description: Tra8 Location: 1 095244-1 095868 bp Feature: gene Location: 1191333-1192352 bp Ori: AKP01355.1 Feature: domain Description: PRK10703 Location: 1191336-1191474 bp Feature: domain Description: PRK1 0703 Location: 1 1 91 336-1 1 91 474 bp Feature: domain Description: PBP1_GalR Location: 1191525-1192332 bp Feature: domain Description: PBP1 _GalR Location: 1 1 91 525-1 1 92332 bp Feature: gene Location: 1192521-1193000 bp Feature: gene Location: 1193084-1194466 bp Ori: AKP01357.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1193402-1194020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 93402-1 1 94020 bp Feature: domain Description: GIIM Note: maturase Location: 1194074-1194302 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 94074-1 1 94302 bp Feature: gene Location: 1194962-1195789 bp Ori: AKP01358.1 Feature: domain Description: Ape1-like_AP-endo Location: 1194965-1195781 bp Feature: domain Description: Ape1 -like_AP-endo Location: 1 1 94965-1 1 95781 bp Feature: gene Location: 1195792-1196124 bp Ori: AKP01359.1 Feature: domain Description: NTP-PPase_u3 Location: 1195807-1196053 bp Feature: domain Description: NTP-PPase_u3 Location: 1 1 95807-1 1 96053 bp Feature: gene Location: 1296805-1297785 bp Ori: AKP01467.1 Feature: domain Description: Tas Location: 1296817-1297738 bp Feature: domain Description: Tas Location: 1 29681 7-1 297738 bp Feature: gene Location: 1297824-1299326 bp Ori: AKP01468.1 Feature: domain Description: GT4_GtfA-like Location: 1297833-1299294 bp Feature: domain Description: GT4_GtfA-like Location: 1 297833-1 299294 bp Feature: gene Location: 1299391-1300773 bp Ori: AKP01469.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1299709-1300327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 299709-1 300327 bp Feature: domain Description: GIIM Note: maturase Location: 1300381-1300609 bp Feature: domain Description: GIIM Note: maturase Location: 1 300381 -1 300609 bp Feature: gene Location: 1301281-1303518 bp Ori: AKP01470.1 Feature: domain Description: Mub_B2 Location: 1301431-1301650 bp Feature: domain Description: Mub_B2 Location: 1 301 431 -1 301 650 bp Feature: domain Description: Mub_B2 Location: 1302205-1302439 bp Feature: domain Description: Mub_B2 Location: 1 302205-1 302439 bp Feature: domain Description: PT Location: 1303177-1303255 bp Feature: domain Description: PT Location: 1 3031 77-1 303255 bp Feature: domain Description: Gram_pos_anchor Location: 1303393-1303513 bp Feature: domain Description: Gram_pos_anchor Location: 1 303393-1 30351 3 bp Feature: gene Location: 1303961-1304947 bp Ori: AKP01471.1 Feature: domain Description: YSIRK_signal Location: 1304012-1304081 bp Feature: domain Description: YSIRK_signal Location: 1 30401 2-1 304081 bp Feature: gene Location: 1394188-1398654 bp Ori: AKP01559.1 Feature: domain Description: KxYKxGKxW Location: 1394200-1394263 bp Feature: domain Description: KxYKxGKxW Location: 1 394200-1 394263 bp Feature: domain Description: COG5263 Location: 1394347-1394938 bp Feature: domain Description: COG5263 Location: 1 394347-1 394938 bp Feature: domain Description: COG5263 Location: 1394977-1395331 bp Feature: domain Description: COG5263 Location: 1 394977-1 395331 bp Feature: domain Description: COG5263 Location: 1395352-1395784 bp Feature: domain Description: COG5263 Location: 1 395352-1 395784 bp Feature: domain Description: glucan_65_rpt Location: 1395892-1395973 bp Feature: domain Description: glucan_65_rpt Location: 1 395892-1 395973 bp Feature: domain Description: Glyco_hydro_70 Location: 1396216-1398586 bp Feature: domain Description: Glyco_hydro_70 Location: 1 39621 6-1 398586 bp Feature: gene Location: 1398810-1399691 bp Ori: AKP01560.1 Feature: domain Description: COG5263 Location: 1398936-1399335 bp Feature: domain Description: COG5263 Location: 1 398936-1 399335 bp Feature: domain Description: Spr Location: 1399362-1399653 bp Feature: domain Description: Spr Location: 1 399362-1 399653 bp Feature: gene Location: 1399842-1401215 bp Ori: AKP01561.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1400160-1400778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4001 60-1 400778 bp Feature: domain Description: GIIM Note: maturase Location: 1400832-1401060 bp Feature: domain Description: GIIM Note: maturase Location: 1 400832-1 401 060 bp Feature: gene Location: 1401867-1402325 bp Ori: AKP01562.1 Feature: domain Description: RAYT Location: 1401885-1402266 bp Feature: domain Description: RAYT Location: 1 401 885-1 402266 bp Feature: gene Location: 1402498-1404075 bp Ori: AKP01563.1 Feature: domain Description: prfC Location: 1402513-1404070 bp Feature: domain Description: prfC Location: 1 40251 3-1 404070 bp Feature: gene Location: 1475452-1476693 bp Ori: AKP01639.1 Feature: domain Description: P-type_ATPase_HM Location: 1475515-1476649 bp Feature: domain Description: P-type_ATPase_HM Location: 1 47551 5-1 476649 bp Feature: gene Location: 1476903-1477193 bp Ori: AKP01640.1 Feature: domain Description: YjhB Location: 1476921-1477158 bp Feature: domain Description: YjhB Location: 1 476921 -1 4771 58 bp Feature: gene Location: 1477293-1478675 bp Ori: AKP01641.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1477611-1478229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 47761 1 -1 478229 bp Feature: domain Description: GIIM Note: maturase Location: 1478283-1478511 bp Feature: domain Description: GIIM Note: maturase Location: 1 478283-1 47851 1 bp Feature: gene Location: 1479198-1479692 bp Ori: AKP01642.1 Feature: domain Description: nicotinamidase_related Location: 1479213-1479651 bp Feature: domain Description: nicotinamidase_related Location: 1 47921 3-1 479651 bp Feature: gene Location: 1479918-1483244 bp Ori: AKP01643.1 Feature: domain Description: hsdR Location: 1479924-1480278 bp Feature: domain Description: hsdR Location: 1 479924-1 480278 bp Feature: domain Description: HsdR Location: 1480497-1483158 bp Feature: domain Description: HsdR Location: 1 480497-1 4831 58 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SsuE (COG0431), COG2461 (Uncharacterized conserved protein, DUF438 domain, may contain hemerythrin domain ), ApbE (pfam02424), RVT-GII, GIIM (pfam08388), YSIRK_signal (TIGR01168), Tra8 (COG2826), PRK02363 (DNA-directed RNA polymerase subunit delta; Reviewed), pyrG (PRK05380), PRK12830 (UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed)
rpmE2 (PRK01678), Glutaminase (pfam04960), RAYT (COG1943), LTA_DltD (TIGR04092), PRK05087 (D-alanine--poly(phosphoribitol) ligase subunit DltC), oxalate_frc (TIGR03253), AzgA (COG2252), rpsD (PRK05327), AAK_UMPK-PyrH-Ec (cd04254), frr (TIGR00496)
PRK14830 (undecaprenyl pyrophosphate synthase; Provisional), DUF915 (pfam06028), Acetyltransf_1 (pfam00583), PRK05313 (hypothetical protein; Provisional), ACT_1ZPV (cd04872), Endonuclease_NS (smart00892), PLDc_Bfil_DEXD_like (cd09117), ABC_PhnC_transporter (cd03256), DUF454 (pfam04304), DUF3290 (pfam11694)
zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), MBG (pfam17883), Gram_pos_anchor (pfam00746), PRK10703 (HTH-type transcriptional repressor PurR), PBP1_GalR (cd01544), Ape1-like_AP-endo (cd09087), NTP-PPase_u3 (cd11540), Tas (COG0667)
GT4_GtfA-like (cd04949), Mub_B2 (pfam17966), PT (pfam04886), KxYKxGKxW (TIGR03715), COG5263 (Glucan-binding domain (YG repeat) ), glucan_65_rpt (TIGR04035), Glyco_hydro_70 (pfam02324), Spr (COG0791), prfC (TIGR00503), P-type_ATPase_HM (cd07553)
YjhB (COG1051), nicotinamidase_related (cd01014), hsdR (TIGR00348), HsdR (COG4096)