myRT

myRT report for GCA_001051135.1_ASM105113v1

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Seq: CP007442.1 Escherichia coli ACN001, complete genome (4936576 bp)
Overview 1 RT 1: 2094673-2102383 bp 2 RT 2: 3357787-3361518 bp 3 RT 3: 3386061-3391118 bp 4 RT 4: 3992259-3996140 bp 5 RT 5: 4900092-4907134 bp Neighborhood of RT #1 [2094673, 2102640] DUF4917 AAA_15 RVT-Retrons Nuc_deoxyrib_tr HTH_23 Neighborhood of RT #2 [3357787, 3361520] InsE PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [3386061, 3391381] RVT-GII Inovirus_Gp2 DUF3987 Neighborhood of RT #4 [3992259, 3996145] dut slmA RVT-Retrons pyrE rph Neighborhood of RT #5 [4900092, 4907136] Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 2094673-2095692 bp Ori: AKP84760.1 Feature: domain Description: DUF4917 Location: 2094733-2095657 bp Feature: domain Description: DUF491 7 Location: 2094733-2095657 bp Feature: gene Location: 2096756-2099002 bp Ori: AKP84761.1 Feature: domain Description: AAA_15 Location: 2096759-2097767 bp Feature: domain Description: AAA_1 5 Location: 2096759-2097767 bp Feature: gene Location: 2099117-2100217 bp Ori: AKP84762.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2099300-2099828 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2099300-2099828 bp Feature: gene Location: 2100873-2101991 bp Ori: AKP84763.1 Feature: domain Description: Nuc_deoxyrib_tr Location: 2101644-2101815 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 21 01 644-21 01 81 5 bp Feature: gene Location: 2102164-2102640 bp Ori: AKP84764.1 Feature: domain Description: HTH_23 Location: 2102242-2102383 bp Feature: domain Description: HTH_23 Location: 21 02242-21 02383 bp Feature: gene Location: 3357787-3358038 bp Ori: AKP86008.1 Feature: domain Description: InsE Location: 3357802-3357988 bp Feature: domain Description: InsE Location: 3357802-3357988 bp Feature: gene Location: 3358031-3358273 bp Ori: AKP86009.1 Feature: domain Description: PHA02517 Location: 3358034-3358262 bp Feature: domain Description: PHA0251 7 Location: 3358034-3358262 bp Feature: gene Location: 3358600-3360123 bp Ori: AKP86010.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3358873-3359605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3358873-3359605 bp Feature: domain Description: GIIM Note: maturase Location: 3359680-3359878 bp Feature: domain Description: GIIM Note: maturase Location: 3359680-3359878 bp Feature: gene Location: 3360715-3361194 bp Ori: AKP86011.1 Feature: domain Description: PHA02517 Location: 3360775-3361129 bp Feature: domain Description: PHA0251 7 Location: 3360775-3361 1 29 bp Feature: gene Location: 3361194-3361520 bp Ori: AKP86012.1 Feature: domain Description: InsE Location: 3361197-3361518 bp Feature: domain Description: InsE Location: 3361 1 97-3361 51 8 bp Feature: gene Location: 3386061-3386177 bp Feature: gene Location: 3386253-3386378 bp Feature: gene Location: 3387038-3388201 bp Ori: AKP86035.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3387152-3387839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33871 52-3387839 bp Feature: gene Location: 3388527-3389090 bp Ori: AKP86036.1 Feature: domain Description: Inovirus_Gp2 Location: 3388584-3389025 bp Feature: domain Description: Inovirus_Gp2 Location: 3388584-3389025 bp Feature: gene Location: 3389948-3391381 bp Ori: AKP86037.1 Feature: domain Description: DUF3987 Location: 3390041-3391118 bp Feature: domain Description: DUF3987 Location: 3390041 -3391 1 1 8 bp Feature: gene Location: 3992259-3992717 bp Ori: AKP86628.1 Gene: dut Feature: domain Description: dut Location: 3992265-3992712 bp Feature: domain Description: dut Location: 3992265-399271 2 bp Feature: gene Location: 3992824-3993420 bp Ori: AKP86629.1 Gene: slmA Feature: domain Description: slmA Location: 3992830-3993406 bp Feature: domain Description: slmA Location: 3992830-3993406 bp Feature: gene Location: 3993466-3994425 bp Ori: AKP86630.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3993601-3994150 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3993601 -39941 50 bp Feature: gene Location: 3994723-3995364 bp Ori: AKP86631.1 Gene: pyrE Feature: domain Description: pyrE Location: 3994726-3995359 bp Feature: domain Description: pyrE Location: 3994726-3995359 bp Feature: gene Location: 3995429-3996145 bp Ori: AKP86632.1 Gene: rph Feature: domain Description: rph Location: 3995432-3996140 bp Feature: domain Description: rph Location: 3995432-39961 40 bp Feature: gene Location: 4900092-4902077 bp Ori: AKP87513.1 Feature: domain Description: Phage_fiber_2 Location: 4900113-4900233 bp Feature: domain Description: Phage_fiber_2 Location: 49001 1 3-4900233 bp Feature: domain Description: Collar Location: 4901448-4901586 bp Feature: domain Description: Collar Location: 4901 448-4901 586 bp Feature: domain Description: Phage_fiber Location: 4901637-4901676 bp Feature: domain Description: Phage_fiber Location: 4901 637-4901 676 bp Feature: domain Description: Phage_fiber Location: 4901733-4901772 bp Feature: domain Description: Phage_fiber Location: 4901 733-4901 772 bp Feature: domain Description: Phage_fiber Location: 4901778-4901805 bp Feature: domain Description: Phage_fiber Location: 4901 778-4901 805 bp Feature: domain Description: Phage_fiber Location: 4901880-4901919 bp Feature: domain Description: Phage_fiber Location: 4901 880-4901 91 9 bp Feature: domain Description: Phage_fiber Location: 4901925-4901958 bp Feature: domain Description: Phage_fiber Location: 4901 925-4901 958 bp Feature: gene Location: 4902077-4902661 bp Ori: AKP87514.1 Feature: domain Description: Caudo_TAP Location: 4902293-4902650 bp Feature: domain Description: Caudo_TAP Location: 4902293-4902650 bp Feature: gene Location: 4903106-4904710 bp Ori: AKP87515.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4903397-4903988 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4903397-4903988 bp Feature: domain Description: TIR_2 Location: 4904315-4904603 bp Feature: domain Description: TIR_2 Location: 490431 5-4904603 bp Feature: gene Location: 4905070-4905330 bp Ori: AKP87516.1 Feature: domain Description: PRK10597 Location: 4905073-4905313 bp Feature: domain Description: PRK1 0597 Location: 4905073-490531 3 bp Feature: gene Location: 4905550-4907136 bp Ori: AKP87517.1 Feature: domain Description: prfC Location: 4905568-4907134 bp Feature: domain Description: prfC Location: 4905568-49071 34 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4917 (pfam16263), AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), HTH_23 (pfam13384), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Inovirus_Gp2 (pfam11726)
DUF3987 (pfam13148), dut (TIGR00576), slmA (PRK09480), pyrE (TIGR00336), rph (PRK00173), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), TIR_2 (pfam13676)
PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)