myRT

myRT report for GCA_001051995.2_ASM105199v2

Download annotations/find similar RTs

Seq: CP014646.1 Thauera humireducens strain SgZ-1, complete genome (4171754 bp)
Overview 1 RT 1: 1904524-1909531 bp 2 RT 2: 2637099-2643394 bp 3 RT 3: 2937979-2943748 bp 4 RT 4: 3027544-3033797 bp 5 RT 5: 3218902-3225695 bp Neighborhood of RT #1 [1904524, 1909536] DUF4096 DDE_Tnp_1_2 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [2637099, 2643438] APA2 PRK09601 RVT-GII GIIM PEP-CTERM EamA EamA Neighborhood of RT #3 [2937979, 2943780] COG4321 GATase1_PfpI_1 RVT-GII GIIM CytC5 rep Neighborhood of RT #4 [3027544, 3033797] FapA TlyC RVT-GII GIIM tpx Neighborhood of RT #5 [3218902, 3225718] PRK00711 PRK11169 RVT_N RVT-GII GIIM HNHc PtsA PTS_HPr_family Feature: gene Location: 1904524-1904856 bp Ori: AMO37081.1 Feature: domain Description: DUF4096 Location: 1904542-1904758 bp Feature: domain Description: DUF4096 Location: 1 904542-1 904758 bp Feature: gene Location: 1904922-1905281 bp Ori: AMO37082.1 Feature: domain Description: DDE_Tnp_1_2 Location: 1905021-1905264 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 1 905021 -1 905264 bp Feature: gene Location: 1906507-1907877 bp Ori: AMO37083.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1906843-1907455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 906843-1 907455 bp Feature: domain Description: GIIM Note: maturase Location: 1907512-1907731 bp Feature: domain Description: GIIM Note: maturase Location: 1 90751 2-1 907731 bp Feature: gene Location: 1908356-1909246 bp Ori: AMO37084.1 Feature: domain Description: PHA02517 Location: 1908422-1909238 bp Feature: domain Description: PHA0251 7 Location: 1 908422-1 909238 bp Feature: gene Location: 1909243-1909536 bp Ori: AMO37085.1 Feature: domain Description: InsE Location: 1909261-1909531 bp Feature: domain Description: InsE Location: 1 909261 -1 909531 bp Feature: gene Location: 2637099-2637968 bp Ori: AMO37666.1 Feature: domain Description: APA2 Location: 2637138-2637963 bp Feature: domain Description: APA2 Location: 26371 38-2637963 bp Feature: gene Location: 2638166-2639257 bp Ori: AMO37667.1 Gene: ychF Feature: domain Description: PRK09601 Location: 2638169-2639255 bp Feature: domain Description: PRK09601 Location: 26381 69-2639255 bp Feature: gene Location: 2639429-2640799 bp Ori: AMO37668.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2639765-2640377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2639765-2640377 bp Feature: domain Description: GIIM Note: maturase Location: 2640437-2640653 bp Feature: domain Description: GIIM Note: maturase Location: 2640437-2640653 bp Feature: gene Location: 2641264-2642217 bp Ori: AMO37669.1 Feature: domain Description: PEP-CTERM Location: 2642137-2642203 bp Feature: domain Description: PEP-CTERM Location: 26421 37-2642203 bp Feature: gene Location: 2642548-2643438 bp Ori: AMO37670.1 Feature: domain Description: EamA Location: 2642575-2642968 bp Feature: domain Description: EamA Location: 2642575-2642968 bp Feature: domain Description: EamA Location: 2643004-2643394 bp Feature: domain Description: EamA Location: 2643004-2643394 bp Feature: gene Location: 2937979-2938353 bp Ori: AMO37912.1 Feature: domain Description: COG4321 Location: 2937982-2938306 bp Feature: domain Description: COG4321 Location: 2937982-2938306 bp Feature: gene Location: 2938427-2939005 bp Ori: AMO37913.1 Feature: domain Description: GATase1_PfpI_1 Location: 2938439-2938985 bp Feature: domain Description: GATase1 _PfpI_1 Location: 2938439-2938985 bp Feature: gene Location: 2939223-2940593 bp Ori: AMO37914.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2939559-2940171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2939559-29401 71 bp Feature: domain Description: GIIM Note: maturase Location: 2940228-2940447 bp Feature: domain Description: GIIM Note: maturase Location: 2940228-2940447 bp Feature: gene Location: 2941246-2941689 bp Ori: AMO37915.1 Feature: domain Description: CytC5 Location: 2941282-2941651 bp Feature: domain Description: CytC5 Location: 2941 282-2941 651 bp Feature: gene Location: 2941786-2943780 bp Ori: AMO37916.1 Feature: domain Description: rep Location: 2941801-2943748 bp Feature: domain Description: rep Location: 2941 801 -2943748 bp Feature: gene Location: 3027544-3029193 bp Ori: AMO37989.1 Feature: domain Description: FapA Location: 3027802-3029137 bp Feature: domain Description: FapA Location: 3027802-30291 37 bp Feature: gene Location: 3029569-3030894 bp Ori: AMO37990.1 Feature: domain Description: TlyC Location: 3029575-3030850 bp Feature: domain Description: TlyC Location: 3029575-3030850 bp Feature: gene Location: 3031009-3032379 bp Ori: AMO37991.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3031345-3031957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3031 345-3031 957 bp Feature: domain Description: GIIM Note: maturase Location: 3032017-3032233 bp Feature: domain Description: GIIM Note: maturase Location: 303201 7-3032233 bp Feature: gene Location: 3032882-3033382 bp Ori: AMO37992.1 Feature: domain Description: tpx Location: 3032885-3033380 bp Feature: domain Description: tpx Location: 3032885-3033380 bp Feature: gene Location: 3033489-3033797 bp Feature: gene Location: 3218902-3220212 bp Ori: AMO38143.1 Feature: domain Description: PRK00711 Location: 3218905-3220162 bp Feature: domain Description: PRK0071 1 Location: 321 8905-32201 62 bp Feature: gene Location: 3220345-3220812 bp Ori: AMO38144.1 Feature: domain Description: PRK11169 Location: 3220351-3220792 bp Feature: domain Description: PRK1 1 1 69 Location: 3220351 -3220792 bp Feature: gene Location: 3221008-3222678 bp Ori: AMO38145.1 Feature: domain Description: RVT_N Location: 3221062-3221305 bp Feature: domain Description: RVT_N Location: 3221 062-3221 305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221350-3221989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3221 350-3221 989 bp Feature: domain Description: GIIM Note: maturase Location: 3222040-3222274 bp Feature: domain Description: GIIM Note: maturase Location: 3222040-3222274 bp Feature: domain Description: HNHc Note: nucleases Location: 3222475-3222631 bp Feature: domain Description: HNHc Note: nucleases Location: 3222475-3222631 bp Feature: gene Location: 3223716-3225446 bp Ori: AMO38146.1 Feature: domain Description: PtsA Location: 3223728-3225438 bp Feature: domain Description: PtsA Location: 3223728-3225438 bp Feature: gene Location: 3225449-3225718 bp Ori: AMO38147.1 Feature: domain Description: PTS_HPr_family Location: 3225452-3225695 bp Feature: domain Description: PTS_HPr_family Location: 3225452-3225695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), DDE_Tnp_1_2 (pfam13586), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), APA2 (COG4360), PRK09601 (redox-regulated ATPase YchF), PEP-CTERM, EamA (pfam00892)
COG4321 (Predicted DNA-binding protein, contains Ribbon-helix-helix (RHH) domain ), GATase1_PfpI_1 (cd03169), CytC5 (COG3245), rep (TIGR01074), FapA (pfam03961), TlyC (COG1253), tpx (PRK00522), PRK00711 (D-amino acid dehydrogenase), PRK11169 (leucine-responsive transcriptional regulator Lrp), RVT_N (pfam13655)
HNHc (smart00507), PtsA (COG1080), PTS_HPr_family (TIGR01003)