myRT

myRT report for GCA_001190805.1_ASM119080v1

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Seq: CP011325.1 Streptococcus agalactiae strain HN016, complete genome (2064722 bp)
Overview 1 RT 1: 97666-105485 bp 2 RT 2: 520161-527186 bp 3 RT 3: 534516-540718 bp 4 RT 4: 572994-580366 bp 5 RT 5: 752358-758398 bp 6 RT 6: 921343-928275 bp 7 RT 7: 1512717-1519888 bp 8 RT 8: 1565264-1573805 bp 9 RT 9: 1991464-1997244 bp Neighborhood of RT #1 [97666, 105508] RVT-GII GIIM NTP_transf_6 DUF2992 RVT-GII GIIM PRK08295 PhoE Neighborhood of RT #2 [520161, 527191] murG FtsQ RVT-GII GIIM FtsA PRK09330 Neighborhood of RT #3 [534516, 540723] McsA ClpA YkuJ RVT-GII GIIM HisM GlnQ Neighborhood of RT #4 [572994, 580380] TTHA1623-like_MBL-fold PRK08643 RVT-GII GIIM PRK07246 PRK05764 Neighborhood of RT #5 [752358, 758400] Cof PRK10416 RVT-GII GIIM YcgQ YraQ Neighborhood of RT #6 [921343, 928280] PRK11856 lipoamide_DH lipoyltrans RVT-GII GIIM COG3442 MurE Neighborhood of RT #7 [1512717, 1519893] DUF4956 PolyPPase_VTC_like RVT-GII GIIM Branch_AA_trans PRK12267 Neighborhood of RT #8 [1565264, 1573807] MurC RVT-GII GIIM HepA Der Neighborhood of RT #9 [1991464, 1997252] rpmF rpmG RVT-GII GIIM Surf_Exclu_PgrA Surf_Exclu_PgrA Surf_Exclu_PgrA LPXTG_anchor Feature: gene Location: 97666-98943 bp Ori: AKT97092.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97870-98485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97870-98485 bp Feature: domain Description: GIIM Note: maturase Location: 98539-98755 bp Feature: domain Description: GIIM Note: maturase Location: 98539-98755 bp Feature: gene Location: 99381-99812 bp Feature: gene Location: 100968-101519 bp Ori: AKT95276.1 Feature: domain Description: NTP_transf_6 Location: 101028-101508 bp Feature: domain Description: NTP_transf_6 Location: 1 01 028-1 01 508 bp Feature: gene Location: 101739-102158 bp Ori: AKT95277.1 Feature: domain Description: DUF2992 Location: 101748-102156 bp Feature: domain Description: DUF2992 Location: 1 01 748-1 021 56 bp Feature: gene Location: 102722-103999 bp Ori: AKT97093.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102926-103541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 02926-1 03541 bp Feature: domain Description: GIIM Note: maturase Location: 103595-103811 bp Feature: domain Description: GIIM Note: maturase Location: 1 03595-1 0381 1 bp Feature: gene Location: 104215-104694 bp Ori: AKT95278.1 Feature: domain Description: PRK08295 Location: 104230-104455 bp Feature: domain Description: PRK08295 Location: 1 04230-1 04455 bp Feature: gene Location: 104816-105508 bp Ori: AKT95279.1 Feature: domain Description: PhoE Location: 104825-105485 bp Feature: domain Description: PhoE Location: 1 04825-1 05485 bp Feature: gene Location: 520161-521237 bp Ori: AKT95658.1 Feature: domain Description: murG Location: 520170-521205 bp Feature: domain Description: murG Location: 5201 70-521 205 bp Feature: gene Location: 521241-522368 bp Ori: AKT95659.1 Feature: domain Description: FtsQ Location: 521487-522201 bp Feature: domain Description: FtsQ Location: 521 487-522201 bp Feature: gene Location: 522938-524215 bp Ori: AKT97103.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 523142-523757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5231 42-523757 bp Feature: domain Description: GIIM Note: maturase Location: 523811-524027 bp Feature: domain Description: GIIM Note: maturase Location: 52381 1 -524027 bp Feature: gene Location: 524516-525889 bp Ori: AKT95660.1 Feature: domain Description: FtsA Location: 524519-525884 bp Feature: domain Description: FtsA Location: 52451 9-525884 bp Feature: gene Location: 525911-527191 bp Ori: AKT95661.1 Feature: domain Description: PRK09330 Location: 525923-527186 bp Feature: domain Description: PRK09330 Location: 525923-5271 86 bp Feature: gene Location: 534516-536777 bp Ori: AKT95669.1 Feature: domain Description: McsA Location: 534519-534618 bp Feature: domain Description: McsA Location: 53451 9-53461 8 bp Feature: domain Description: ClpA Location: 534816-536730 bp Feature: domain Description: ClpA Location: 53481 6-536730 bp Feature: gene Location: 537075-537305 bp Ori: AKT95670.1 Feature: domain Description: YkuJ Location: 537081-537303 bp Feature: domain Description: YkuJ Location: 537081 -537303 bp Feature: gene Location: 537855-539132 bp Ori: AKT97105.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538059-538674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538059-538674 bp Feature: domain Description: GIIM Note: maturase Location: 538728-538944 bp Feature: domain Description: GIIM Note: maturase Location: 538728-538944 bp Feature: gene Location: 539304-539996 bp Ori: AKT95671.1 Feature: domain Description: HisM Location: 539313-539973 bp Feature: domain Description: HisM Location: 53931 3-539973 bp Feature: gene Location: 539989-540723 bp Ori: AKT95672.1 Gene: glnQ Feature: domain Description: GlnQ Location: 540004-540718 bp Feature: domain Description: GlnQ Location: 540004-54071 8 bp Feature: gene Location: 572994-573629 bp Ori: AKT95702.1 Feature: domain Description: TTHA1623-like_MBL-fold Location: 573030-573621 bp Feature: domain Description: TTHA1 623-like_MBL-fold Location: 573030-573621 bp Feature: gene Location: 573860-574624 bp Ori: AKT95703.1 Feature: domain Description: PRK08643 Location: 573863-574622 bp Feature: domain Description: PRK08643 Location: 573863-574622 bp Feature: gene Location: 575187-576464 bp Ori: AKT97106.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 575391-576006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 575391 -576006 bp Feature: domain Description: GIIM Note: maturase Location: 576060-576276 bp Feature: domain Description: GIIM Note: maturase Location: 576060-576276 bp Feature: gene Location: 576594-579101 bp Ori: AKT95704.1 Feature: domain Description: PRK07246 Location: 576639-579099 bp Feature: domain Description: PRK07246 Location: 576639-579099 bp Feature: gene Location: 579187-580380 bp Ori: AKT95705.1 Feature: domain Description: PRK05764 Location: 579193-580366 bp Feature: domain Description: PRK05764 Location: 5791 93-580366 bp Feature: gene Location: 752358-753182 bp Ori: AKT95860.1 Feature: domain Description: Cof Location: 752367-753168 bp Feature: domain Description: Cof Location: 752367-7531 68 bp Feature: gene Location: 753182-754792 bp Ori: AKT95861.1 Feature: domain Description: PRK10416 Location: 753506-754781 bp Feature: domain Description: PRK1 041 6 Location: 753506-754781 bp Feature: gene Location: 755343-756620 bp Ori: AKT97111.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755547-756162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755547-7561 62 bp Feature: domain Description: GIIM Note: maturase Location: 756216-756432 bp Feature: domain Description: GIIM Note: maturase Location: 75621 6-756432 bp Feature: gene Location: 756686-757498 bp Ori: AKT95862.1 Feature: domain Description: YcgQ Location: 756689-757496 bp Feature: domain Description: YcgQ Location: 756689-757496 bp Feature: gene Location: 757498-758400 bp Ori: AKT95863.1 Feature: domain Description: YraQ Location: 757501-758398 bp Feature: domain Description: YraQ Location: 757501 -758398 bp Feature: gene Location: 921343-923100 bp Ori: AKT96011.1 Feature: domain Description: PRK11856 Location: 921346-921694 bp Feature: domain Description: PRK1 1 856 Location: 921 346-921 694 bp Feature: domain Description: lipoamide_DH Location: 921721-923080 bp Feature: domain Description: lipoamide_DH Location: 921 721 -923080 bp Feature: gene Location: 923198-924187 bp Ori: AKT96012.1 Feature: domain Description: lipoyltrans Location: 923213-924161 bp Feature: domain Description: lipoyltrans Location: 92321 3-9241 61 bp Feature: gene Location: 924809-926086 bp Ori: AKT97113.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 925013-925628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92501 3-925628 bp Feature: domain Description: GIIM Note: maturase Location: 925682-925898 bp Feature: domain Description: GIIM Note: maturase Location: 925682-925898 bp Feature: gene Location: 926152-926937 bp Ori: AKT96013.1 Feature: domain Description: COG3442 Location: 926200-926926 bp Feature: domain Description: COG3442 Location: 926200-926926 bp Feature: gene Location: 926937-928280 bp Ori: AKT96014.1 Feature: domain Description: MurE Location: 926970-928275 bp Feature: domain Description: MurE Location: 926970-928275 bp Feature: gene Location: 1512717-1513394 bp Ori: AKT96562.1 Feature: domain Description: DUF4956 Location: 1512804-1513167 bp Feature: domain Description: DUF4956 Location: 1 51 2804-1 51 31 67 bp Feature: gene Location: 1513446-1514141 bp Ori: AKT96563.1 Feature: domain Description: PolyPPase_VTC_like Location: 1513464-1514106 bp Feature: domain Description: PolyPPase_VTC_like Location: 1 51 3464-1 51 41 06 bp Feature: gene Location: 1514510-1515787 bp Ori: AKT97127.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1514714-1515329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 471 4-1 51 5329 bp Feature: domain Description: GIIM Note: maturase Location: 1515383-1515599 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 5383-1 51 5599 bp Feature: gene Location: 1516363-1517700 bp Ori: AKT96564.1 Feature: domain Description: Branch_AA_trans Location: 1516372-1517656 bp Feature: domain Description: Branch_AA_trans Location: 1 51 6372-1 51 7656 bp Feature: gene Location: 1517896-1519893 bp Ori: AKT96565.1 Feature: domain Description: PRK12267 Location: 1517905-1519888 bp Feature: domain Description: PRK1 2267 Location: 1 51 7905-1 51 9888 bp Feature: gene Location: 1565264-1566595 bp Ori: AKT96616.1 Feature: domain Description: MurC Location: 1565273-1566569 bp Feature: domain Description: MurC Location: 1 565273-1 566569 bp Feature: gene Location: 1566605-1567222 bp Feature: gene Location: 1567394-1568671 bp Ori: AKT97130.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1567598-1568213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 567598-1 56821 3 bp Feature: domain Description: GIIM Note: maturase Location: 1568267-1568483 bp Feature: domain Description: GIIM Note: maturase Location: 1 568267-1 568483 bp Feature: gene Location: 1569244-1572342 bp Ori: AKT96618.1 Feature: domain Description: HepA Location: 1570786-1572334 bp Feature: domain Description: HepA Location: 1 570786-1 572334 bp Feature: gene Location: 1572497-1573807 bp Ori: AKT96619.1 Gene: engA Feature: domain Description: Der Location: 1572500-1573805 bp Feature: domain Description: Der Location: 1 572500-1 573805 bp Feature: gene Location: 1991464-1991646 bp Ori: AKT97021.1 Feature: domain Description: rpmF Location: 1991467-1991629 bp Feature: domain Description: rpmF Location: 1 991 467-1 991 629 bp Feature: gene Location: 1991662-1991811 bp Ori: AKT97022.1 Feature: domain Description: rpmG Location: 1991665-1991809 bp Feature: domain Description: rpmG Location: 1 991 665-1 991 809 bp Feature: gene Location: 1992111-1993388 bp Ori: AKT97138.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1992315-1992930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 99231 5-1 992930 bp Feature: domain Description: GIIM Note: maturase Location: 1992984-1993200 bp Feature: domain Description: GIIM Note: maturase Location: 1 992984-1 993200 bp Feature: gene Location: 1993949-1994410 bp Feature: gene Location: 1994415-1997252 bp Ori: AKT97024.1 Feature: domain Description: Surf_Exclu_PgrA Location: 1994517-1994892 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1 99451 7-1 994892 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1994994-1995297 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1 994994-1 995297 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1995369-1996578 bp Feature: domain Description: Surf_Exclu_PgrA Location: 1 995369-1 996578 bp Feature: domain Description: LPXTG_anchor Location: 1997151-1997244 bp Feature: domain Description: LPXTG_anchor Location: 1 9971 51 -1 997244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), NTP_transf_6 (pfam06042), DUF2992 (pfam11208), PRK08295 (RNA polymerase sporulation sigma factor SigH), PhoE (COG0406), murG (TIGR01133), FtsQ (pfam03799), FtsA (smart00842), PRK09330 (cell division protein FtsZ; Validated)
McsA (COG3880), ClpA (TIGR02639), YkuJ (COG4703), HisM (COG0765), GlnQ (COG1126), TTHA1623-like_MBL-fold (cd16322), PRK08643 ((S)-acetoin forming diacetyl reductase), PRK07246 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), PRK05764 (aspartate aminotransferase; Provisional), Cof (COG0561)
PRK10416 (signal recognition particle-docking protein FtsY; Provisional), YcgQ (COG3689), YraQ (COG0701), PRK11856 (branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed), lipoamide_DH (TIGR01350), lipoyltrans (TIGR00545), COG3442 (Glutamine amidotransferase related to the GATase domain of CobQ ), MurE (COG0769), DUF4956 (pfam16316), PolyPPase_VTC_like (cd07750)
Branch_AA_trans (pfam05525), PRK12267 (methionyl-tRNA synthetase; Reviewed), MurC (COG0773), HepA (COG0553), Der (COG1160), rpmF (PRK12286), rpmG (PRK00595), Surf_Exclu_PgrA (TIGR04320), LPXTG_anchor (TIGR01167)