myRT

myRT report for GCA_001266795.1_ASM126679v1

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Seq: CP011929.1 Marinobacter sp. CP1, complete genome (4768422 bp)
Overview 1 RT 1: 1153169-1156806 bp 2 RT 2: 2852285-2858681 bp 3 RT 3: 3432222-3435878 bp 4 RT 4: 4209355-4213831 bp Neighborhood of RT #1 [1153169, 1156806] Imm8 RVT-GII GIIM DinB Neighborhood of RT #2 [2852285, 2858713] MFS_YajR_like PRK09010 RVT-GII Intron_maturas2 HNHc ntrC Neighborhood of RT #3 [3432222, 3436219] COG3791 RVT-GII GIIM PRK09039 Neighborhood of RT #4 [4209355, 4213836] KOG2415 RVT-GII GIIM KOG3954 KOG3180 Feature: gene Location: 1153169-1153519 bp Ori: AKV95660.1 Feature: domain Description: Imm8 Location: 1153223-1153502 bp Feature: domain Description: Imm8 Location: 1 1 53223-1 1 53502 bp Feature: gene Location: 1153619-1153903 bp Feature: gene Location: 1154016-1155341 bp Ori: AKV95662.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154310-1154928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 5431 0-1 1 54928 bp Feature: domain Description: GIIM Note: maturase Location: 1154976-1155198 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 54976-1 1 551 98 bp Feature: gene Location: 1155838-1156380 bp Ori: AKV95663.1 Feature: domain Description: DinB Location: 1155850-1156369 bp Feature: domain Description: DinB Location: 1 1 55850-1 1 56369 bp Feature: gene Location: 1156489-1156806 bp Feature: gene Location: 2852285-2853655 bp Ori: AKV97039.1 Feature: domain Description: MFS_YajR_like Location: 2852321-2853437 bp Feature: domain Description: MFS_YajR_like Location: 2852321 -2853437 bp Feature: gene Location: 2853713-2854237 bp Ori: AKV97040.1 Feature: domain Description: PRK09010 Location: 2853719-2854235 bp Feature: domain Description: PRK0901 0 Location: 285371 9-2854235 bp Feature: gene Location: 2854852-2856738 bp Ori: AKV97041.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2855143-2855962 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28551 43-2855962 bp Feature: domain Description: Intron_maturas2 Location: 2856100-2856340 bp Feature: domain Description: Intron_maturas2 Location: 28561 00-2856340 bp Feature: domain Description: HNHc Note: nucleases Location: 2856484-2856667 bp Feature: domain Description: HNHc Note: nucleases Location: 2856484-2856667 bp Feature: gene Location: 2856832-2857224 bp Feature: gene Location: 2857286-2858713 bp Ori: AKV97043.1 Gene: glnG Feature: domain Description: ntrC Location: 2857307-2858681 bp Feature: domain Description: ntrC Location: 2857307-2858681 bp Feature: gene Location: 3432222-3432620 bp Ori: AKV97510.1 Feature: domain Description: COG3791 Location: 3432228-3432612 bp Feature: domain Description: COG3791 Location: 3432228-343261 2 bp Feature: gene Location: 3432696-3433025 bp Feature: gene Location: 3433520-3434845 bp Ori: AKV97512.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3433814-3434432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 343381 4-3434432 bp Feature: domain Description: GIIM Note: maturase Location: 3434480-3434702 bp Feature: domain Description: GIIM Note: maturase Location: 3434480-3434702 bp Feature: gene Location: 3434960-3435511 bp Feature: gene Location: 3435536-3436219 bp Ori: AKV97514.1 Feature: domain Description: PRK09039 Location: 3435659-3435878 bp Feature: domain Description: PRK09039 Location: 3435659-3435878 bp Feature: gene Location: 4209355-4209633 bp Feature: gene Location: 4209627-4210220 bp Ori: AKV98123.1 Feature: domain Description: KOG2415 Location: 4209630-4210131 bp Feature: domain Description: KOG241 5 Location: 4209630-421 01 31 bp Feature: gene Location: 4210333-4211700 bp Ori: AKV98124.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4210666-4211278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421 0666-421 1 278 bp Feature: domain Description: GIIM Note: maturase Location: 4211338-4211548 bp Feature: domain Description: GIIM Note: maturase Location: 421 1 338-421 1 548 bp Feature: gene Location: 4212145-4213086 bp Ori: AKV98125.1 Feature: domain Description: KOG3954 Location: 4212151-4213075 bp Feature: domain Description: KOG3954 Location: 421 21 51 -421 3075 bp Feature: gene Location: 4213087-4213836 bp Ori: AKV98126.1 Feature: domain Description: KOG3180 Location: 4213090-4213831 bp Feature: domain Description: KOG31 80 Location: 421 3090-421 3831 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Imm8 (pfam15586), RVT-GII, GIIM (pfam08388), DinB (pfam05163), MFS_YajR_like (cd17472), PRK09010 (single-stranded DNA-binding protein; Provisional), Intron_maturas2 (pfam01348), HNHc (smart00507), ntrC (TIGR01818), COG3791 (Uncharacterized conserved protein )
PRK09039 (peptidoglycan -binding protein), KOG2415 (KOG2415, Electron transfer flavoprotein ubiquinone oxidoreductase ), KOG3954 (KOG3954, Electron transfer flavoprotein, alpha subunit ), KOG3180 (KOG3180, Electron transfer flavoprotein, beta subunit )