myRT

myRT report for GCA_001307175.1_ASM130717v1

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Seq: CP012753.1 Klebsiella pneumoniae strain KP617, complete genome (5416282 bp)
Overview 1 RT 1: 34808-41279 bp 2 RT 2: 229849-236115 bp 3 RT 3: 1513961-1519325 bp 4 RT 4: 4394735-4398992 bp Neighborhood of RT #1 [34808, 41293] SbcB dacD RVT-GII PRK10016 YccC Neighborhood of RT #2 [229849, 236309] RVT-GII PRK10276 Neighborhood of RT #3 [1513961, 1519381] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #4 [4394735, 4400218] FimC FimD RVT-UG4 Feature: gene Location: 34808-36232 bp Ori: ALH83370.1 Gene: sbcB Feature: domain Description: SbcB Location: 34814-36230 bp Feature: domain Description: SbcB Location: 3481 4-36230 bp Feature: gene Location: 36413-37576 bp Ori: ALH88257.1 Feature: domain Description: dacD Location: 36416-37571 bp Feature: domain Description: dacD Location: 3641 6-37571 bp Feature: gene Location: 38097-39581 bp Ori: ALH83371.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38499-39189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38499-391 89 bp Feature: gene Location: 39663-40136 bp Ori: ALH83372.1 Feature: domain Description: PRK10016 Location: 39666-40125 bp Feature: domain Description: PRK1 001 6 Location: 39666-401 25 bp Feature: gene Location: 40235-41293 bp Ori: ALH83373.1 Feature: domain Description: YccC Location: 40241-41279 bp Feature: domain Description: YccC Location: 40241 -41 279 bp Feature: gene Location: 229849-232032 bp Feature: gene Location: 232045-232779 bp Feature: gene Location: 234191-235675 bp Ori: ALH83547.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234593-235283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234593-235283 bp Feature: gene Location: 235753-235992 bp Feature: gene Location: 235992-236309 bp Ori: ALH83549.1 Feature: domain Description: PRK10276 Location: 235998-236115 bp Feature: domain Description: PRK1 0276 Location: 235998-2361 1 5 bp Feature: gene Location: 1513961-1515226 bp Ori: ALH84752.1 Feature: domain Description: umuC Location: 1513964-1515224 bp Feature: domain Description: umuC Location: 1 51 3964-1 51 5224 bp Feature: gene Location: 1515229-1515648 bp Ori: ALH84753.1 Feature: domain Description: PRK10276 Location: 1515232-1515643 bp Feature: domain Description: PRK1 0276 Location: 1 51 5232-1 51 5643 bp Feature: gene Location: 1515727-1517211 bp Ori: ALH84754.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1516129-1516819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 61 29-1 51 681 9 bp Feature: gene Location: 1517829-1518071 bp Ori: ALH84755.1 Feature: domain Description: DinI Location: 1517880-1518060 bp Feature: domain Description: DinI Location: 1 51 7880-1 51 8060 bp Feature: gene Location: 1518242-1519381 bp Ori: ALH84756.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1518425-1519325 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 1 51 8425-1 51 9325 bp Feature: gene Location: 4394735-4395499 bp Ori: ALH87331.1 Feature: domain Description: FimC Location: 4394780-4395482 bp Feature: domain Description: FimC Location: 4394780-4395482 bp Feature: gene Location: 4395546-4398140 bp Ori: ALH87332.1 Feature: domain Description: FimD Location: 4395588-4398129 bp Feature: domain Description: FimD Location: 4395588-43981 29 bp Feature: gene Location: 4398137-4400218 bp Ori: ALH87333.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4398548-4398992 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4398548-4398992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SbcB (COG2925), dacD (PRK11397), RVT-GII, PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), FimC (COG3121)
FimD (COG3188), RVT-UG4

Seq: CP012754.1 Klebsiella pneumoniae strain KP617 plasmid KP-plasmid1, complete sequence (273628 bp)
Overview 1 RT 1: 110441-118725 bp 2 RT 2: 246698-251711 bp Neighborhood of RT #1 [110441, 118841] umuC PRK10276 RVT-GII cas7_csf2 DinG PRK08074 DinG Neighborhood of RT #2 [246698, 251711] INT_Cre_C RVT-GII HHA Feature: gene Location: 110441-111712 bp Ori: ALH88592.1 Feature: domain Description: umuC Location: 110444-111704 bp Feature: domain Description: umuC Location: 110444-111704 bp Feature: gene Location: 111712-112134 bp Ori: ALH88593.1 Feature: domain Description: PRK10276 Location: 111718-112120 bp Feature: domain Description: PRK102 76 Location: 111718-112 12 0 bp Feature: gene Location: 112547-114031 bp Ori: ALH88594.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112949-113639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 949-113639 bp Feature: gene Location: 115230-116021 bp Ori: ALH88595.1 Feature: domain Description: cas7_csf2 Location: 115551-115965 bp Feature: domain Description: cas7_csf2 Location: 115551-115965 bp Feature: gene Location: 116967-118841 bp Ori: ALH88596.1 Feature: domain Description: DinG Location: 117000-117501 bp Feature: domain Description: DinG Location: 117000-117501 bp Feature: domain Description: PRK08074 Location: 117504-117693 bp Feature: domain Description: PRK08074 Location: 117504-117693 bp Feature: domain Description: DinG Location: 118020-118725 bp Feature: domain Description: DinG Location: 11802 0-11872 5 bp Feature: gene Location: 246698-247015 bp Feature: gene Location: 247081-248217 bp Ori: ALH88713.1 Feature: domain Description: INT_Cre_C Location: 247504-248158 bp Feature: domain Description: INT_Cre_C Location: 2 47504-2 48158 bp Feature: gene Location: 248303-249787 bp Ori: ALH88714.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248705-249395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 48705-2 49395 bp Feature: gene Location: 250304-250558 bp Ori: ALH88715.1 Feature: domain Description: HHA Location: 250355-250538 bp Feature: domain Description: HHA Location: 2 50355-2 50538 bp Feature: gene Location: 250644-251711 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, cas7_csf2 (TIGR03115), DinG (COG1199), PRK08074 (bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated), INT_Cre_C (cd00799), HHA (pfam05321)