myRT

myRT report for GCA_001314245.2_ASM131424v2

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Seq: CP012890.1 Lactobacillus gallinarum strain HFD4, complete genome (2317164 bp)
Overview 1 RT 1: 343887-349017 bp 2 RT 2: 1233766-1239044 bp 3 RT 3: 1582789-1588067 bp Neighborhood of RT #1 [343887, 349070] ACD_LpsHSP_like Peptidase_C1_2 RVT-GII GIIM COG3464 Neighborhood of RT #2 [1233766, 1239076] COG3666 DDE_Tnp_1 RVT-GII GIIM HAD_Pase Neighborhood of RT #3 [1582789, 1588084] YkuD_like RVT-GII GIIM MATE_MepA_like Tra8 Feature: gene Location: 343887-344312 bp Ori: ALJ22818.1 Feature: domain Description: ACD_LpsHSP_like Location: 343995-344271 bp Feature: domain Description: ACD_LpsHSP_like Location: 343995-344271 bp Feature: gene Location: 344452-345768 bp Ori: ALJ22819.1 Feature: domain Description: Peptidase_C1_2 Location: 344464-345766 bp Feature: domain Description: Peptidase_C1 _2 Location: 344464-345766 bp Feature: gene Location: 345861-347153 bp Ori: ALJ22820.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346062-346680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 346062-346680 bp Feature: domain Description: GIIM Note: maturase Location: 346737-346944 bp Feature: domain Description: GIIM Note: maturase Location: 346737-346944 bp Feature: gene Location: 347354-347542 bp Feature: gene Location: 347793-349070 bp Ori: ALJ22822.1 Feature: domain Description: COG3464 Location: 347898-349017 bp Feature: domain Description: COG3464 Location: 347898-34901 7 bp Feature: gene Location: 1233766-1235472 bp Ori: ALJ23483.1 Feature: domain Description: COG3666 Location: 1233772-1234243 bp Feature: domain Description: COG3666 Location: 1 233772-1 234243 bp Feature: domain Description: DDE_Tnp_1 Location: 1234558-1235311 bp Feature: domain Description: DDE_Tnp_1 Location: 1 234558-1 23531 1 bp Feature: gene Location: 1235920-1236108 bp Feature: gene Location: 1236291-1237589 bp Ori: ALJ23485.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1236492-1237110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 236492-1 2371 1 0 bp Feature: domain Description: GIIM Note: maturase Location: 1237167-1237374 bp Feature: domain Description: GIIM Note: maturase Location: 1 2371 67-1 237374 bp Feature: gene Location: 1237667-1238188 bp Feature: gene Location: 1238195-1239076 bp Ori: ALJ23487.1 Feature: domain Description: HAD_Pase Location: 1238207-1239044 bp Feature: domain Description: HAD_Pase Location: 1 238207-1 239044 bp Feature: gene Location: 1582789-1583994 bp Ori: ALJ23760.1 Feature: domain Description: YkuD_like Location: 1583611-1583989 bp Feature: domain Description: YkuD_like Location: 1 58361 1 -1 583989 bp Feature: gene Location: 1584213-1584401 bp Feature: gene Location: 1584602-1585900 bp Ori: ALJ23762.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1584803-1585421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 584803-1 585421 bp Feature: domain Description: GIIM Note: maturase Location: 1585478-1585685 bp Feature: domain Description: GIIM Note: maturase Location: 1 585478-1 585685 bp Feature: gene Location: 1585974-1587047 bp Feature: domain Description: MATE_MepA_like Location: 1585989-1587009 bp Feature: domain Description: MATE_MepA_like Location: 1 585989-1 587009 bp Feature: gene Location: 1587032-1588084 bp Ori: ALJ23763.1 Feature: domain Description: Tra8 Location: 1587074-1588067 bp Feature: domain Description: Tra8 Location: 1 587074-1 588067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACD_LpsHSP_like (cd06471), Peptidase_C1_2 (pfam03051), RVT-GII, GIIM (pfam08388), COG3464 (Transposase ), COG3666 (Transposase ), DDE_Tnp_1 (pfam01609), HAD_Pase (cd16418), YkuD_like (cl21614), MATE_MepA_like (cd13143)
Tra8 (COG2826)