myRT

myRT report for GCA_001314975.1_ASM131497v1

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Seq: CP012937.1 Bacteroides thetaiotaomicron strain 7330, complete genome (6487685 bp)
Overview 1 RT 1: 1976048-1981686 bp 2 RT 2: 2690670-2696948 bp 3 RT 3: 3415444-3420901 bp 4 RT 4: 3430332-3434736 bp 5 RT 5: 4280316-4287578 bp 6 RT 6: 4623181-4635138 bp 7 RT 7: 4919966-4923444 bp 8 RT 8: 5343488-5349690 bp Neighborhood of RT #1 [1976048, 1981691] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF3875 Neighborhood of RT #2 [2690670, 2696948] Bac_Flav_CT_G Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Neighborhood of RT #3 [3415444, 3420957] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Neighborhood of RT #4 [3430332, 3434736] YbdN RVT-DGRs Avd_like Neighborhood of RT #5 [4280316, 4288303] DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G Smc Neighborhood of RT #6 [4623181, 4635138] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 DUF3320 RVT-Retrons Neighborhood of RT #7 [4919966, 4923521] DUF4134 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Neighborhood of RT #8 [5343488, 5349785] BACON RVT-GII GIIM RVT-GII KOG1378 FAD_oxidored Feature: gene Location: 1976048-1976680 bp Ori: ALJ41120.1 Feature: domain Description: DUF4141 Location: 1976066-1976219 bp Feature: domain Description: DUF41 41 Location: 1 976066-1 97621 9 bp Feature: gene Location: 1976881-1977159 bp Ori: ALJ41121.1 Feature: domain Description: Bac_Flav_CT_G Location: 1976899-1977157 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 976899-1 9771 57 bp Feature: gene Location: 1977237-1979048 bp Ori: ALJ41122.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1977501-1978323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 977501 -1 978323 bp Feature: domain Description: Intron_maturas2 Location: 1978398-1978713 bp Feature: domain Description: Intron_maturas2 Location: 1 978398-1 97871 3 bp Feature: domain Description: HNHc Note: nucleases Location: 1978869-1979019 bp Feature: domain Description: HNHc Note: nucleases Location: 1 978869-1 97901 9 bp Feature: gene Location: 1979595-1981424 bp Ori: ALJ41123.1 Feature: domain Description: Bac_Flav_CT_G Location: 1979598-1981410 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 979598-1 981 41 0 bp Feature: gene Location: 1981521-1981691 bp Ori: ALJ41124.1 Feature: domain Description: DUF3875 Location: 1981530-1981686 bp Feature: domain Description: DUF3875 Location: 1 981 530-1 981 686 bp Feature: gene Location: 2690670-2690960 bp Feature: gene Location: 2690976-2693276 bp Ori: ALJ41735.1 Feature: domain Description: Bac_Flav_CT_G Location: 2691054-2692560 bp Feature: domain Description: Bac_Flav_CT_G Location: 2691 054-2692560 bp Feature: domain Description: Bac_Flav_CT_G Location: 2692956-2693271 bp Feature: domain Description: Bac_Flav_CT_G Location: 2692956-2693271 bp Feature: gene Location: 2693900-2695558 bp Ori: ALJ41736.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 2693954-2694197 bp Feature: domain Description: RVT_N Location: 2693954-26941 97 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2694242-2694893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2694242-2694893 bp Feature: domain Description: GIIM Note: maturase Location: 2694944-2695178 bp Feature: domain Description: GIIM Note: maturase Location: 2694944-26951 78 bp Feature: gene Location: 2695561-2696214 bp Ori: ALJ41737.1 Feature: domain Description: Bac_Flav_CT_G Location: 2695675-2696131 bp Feature: domain Description: Bac_Flav_CT_G Location: 2695675-26961 31 bp Feature: gene Location: 2696208-2696948 bp Feature: gene Location: 3415444-3415716 bp Ori: ALJ42320.1 Feature: domain Description: DUF3876 Location: 3415471-3415702 bp Feature: domain Description: DUF3876 Location: 341 5471 -341 5702 bp Feature: gene Location: 3415723-3416325 bp Ori: ALJ42321.1 Feature: domain Description: Bac_Flav_CT_G Location: 3415837-3416299 bp Feature: domain Description: Bac_Flav_CT_G Location: 341 5837-341 6299 bp Feature: gene Location: 3416328-3417986 bp Ori: ALJ42322.1 Gene: ltrA_5 Feature: domain Description: RVT_N Location: 3416382-3416625 bp Feature: domain Description: RVT_N Location: 341 6382-341 6625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3416670-3417321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341 6670-341 7321 bp Feature: domain Description: GIIM Note: maturase Location: 3417372-3417606 bp Feature: domain Description: GIIM Note: maturase Location: 341 7372-341 7606 bp Feature: gene Location: 3418610-3420637 bp Ori: ALJ42323.1 Feature: domain Description: Bac_Flav_CT_G Location: 3418613-3420632 bp Feature: domain Description: Bac_Flav_CT_G Location: 341 861 3-3420632 bp Feature: gene Location: 3420622-3420957 bp Ori: ALJ42324.1 Feature: domain Description: DUF4133 Location: 3420640-3420901 bp Feature: domain Description: DUF41 33 Location: 3420640-3420901 bp Feature: gene Location: 3430332-3431447 bp Ori: ALJ42336.1 Feature: domain Description: YbdN Location: 3430338-3431427 bp Feature: domain Description: YbdN Location: 3430338-3431 427 bp Feature: gene Location: 3431615-3432070 bp Feature: gene Location: 3432030-3433268 bp Ori: ALJ42338.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3432111-3432867 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 34321 1 1 -3432867 bp Feature: gene Location: 3433865-3434236 bp Ori: ALJ42339.1 Feature: domain Description: Avd_like Location: 3433892-3434195 bp Feature: domain Description: Avd_like Location: 3433892-34341 95 bp Feature: gene Location: 3434254-3434736 bp Feature: gene Location: 4280316-4280618 bp Ori: ALJ42983.1 Feature: domain Description: DUF4133 Location: 4280364-4280541 bp Feature: domain Description: DUF41 33 Location: 4280364-4280541 bp Feature: gene Location: 4280773-4282779 bp Ori: ALJ42984.1 Feature: domain Description: Bac_Flav_CT_G Location: 4280920-4282774 bp Feature: domain Description: Bac_Flav_CT_G Location: 4280920-4282774 bp Feature: gene Location: 4283403-4285061 bp Ori: ALJ42985.1 Gene: ltrA_6 Feature: domain Description: RVT_N Location: 4283457-4283700 bp Feature: domain Description: RVT_N Location: 4283457-4283700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4283745-4284396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4283745-4284396 bp Feature: domain Description: GIIM Note: maturase Location: 4284447-4284681 bp Feature: domain Description: GIIM Note: maturase Location: 4284447-4284681 bp Feature: gene Location: 4285064-4285735 bp Ori: ALJ42986.1 Feature: domain Description: Bac_Flav_CT_G Location: 4285178-4285625 bp Feature: domain Description: Bac_Flav_CT_G Location: 42851 78-4285625 bp Feature: gene Location: 4285745-4288303 bp Ori: ALJ42987.1 Feature: domain Description: Smc Location: 4287329-4287578 bp Feature: domain Description: Smc Location: 4287329-4287578 bp Feature: gene Location: 4623181-4624980 bp Ori: ALJ43285.1 Gene: rpsA_2 Feature: domain Description: rpsA Location: 4623250-4624864 bp Feature: domain Description: rpsA Location: 4623250-4624864 bp Feature: gene Location: 4625149-4630977 bp Ori: ALJ43286.1 Gene: recD2_3 Feature: domain Description: DUF4011 Location: 4626304-4626817 bp Feature: domain Description: DUF401 1 Location: 4626304-462681 7 bp Feature: domain Description: DEXXQc_SF1 Location: 4627156-4627756 bp Feature: domain Description: DEXXQc_SF1 Location: 46271 56-4627756 bp Feature: domain Description: DEXXQc_SF1 Location: 4628593-4629343 bp Feature: domain Description: DEXXQc_SF1 Location: 4628593-4629343 bp Feature: domain Description: SF1_C_Upf1 Location: 4629352-4629865 bp Feature: domain Description: SF1 _C_Upf1 Location: 4629352-4629865 bp Feature: domain Description: MTES_1575 Location: 4630015-4630303 bp Feature: domain Description: MTES_1 575 Location: 463001 5-4630303 bp Feature: domain Description: DUF3320 Location: 4630483-4630627 bp Feature: domain Description: DUF3320 Location: 4630483-4630627 bp Feature: gene Location: 4631011-4632144 bp Ori: ALJ43287.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4631335-4631887 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4631 335-4631 887 bp Feature: gene Location: 4632350-4634536 bp Feature: gene Location: 4634938-4635138 bp Feature: gene Location: 4919966-4920292 bp Ori: ALJ43505.1 Feature: domain Description: DUF4134 Location: 4919987-4920278 bp Feature: domain Description: DUF41 34 Location: 491 9987-4920278 bp Feature: gene Location: 4920347-4920637 bp Ori: ALJ43506.1 Feature: domain Description: DUF4134 Location: 4920419-4920620 bp Feature: domain Description: DUF41 34 Location: 492041 9-4920620 bp Feature: gene Location: 4921179-4922990 bp Ori: ALJ43507.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4921443-4922265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4921 443-4922265 bp Feature: domain Description: Intron_maturas2 Location: 4922454-4922664 bp Feature: domain Description: Intron_maturas2 Location: 4922454-4922664 bp Feature: domain Description: HNHc Note: nucleases Location: 4922814-4922919 bp Feature: domain Description: HNHc Note: nucleases Location: 492281 4-492291 9 bp Feature: gene Location: 4923015-4923209 bp Ori: ALJ43508.1 Feature: domain Description: DUF4134 Location: 4923105-4923195 bp Feature: domain Description: DUF41 34 Location: 49231 05-49231 95 bp Feature: gene Location: 4923225-4923521 bp Ori: ALJ43509.1 Feature: domain Description: DUF4133 Location: 4923267-4923444 bp Feature: domain Description: DUF41 33 Location: 4923267-4923444 bp Feature: gene Location: 5343488-5343883 bp Ori: ALJ43841.1 Feature: domain Description: BACON Location: 5343593-5343872 bp Feature: domain Description: BACON Location: 5343593-5343872 bp Feature: gene Location: 5344234-5344491 bp Feature: gene Location: 5344591-5345109 bp Ori: ALJ43843.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5344603-5344843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5344603-5344843 bp Feature: domain Description: GIIM Note: maturase Location: 5344855-5345086 bp Feature: domain Description: GIIM Note: maturase Location: 5344855-5345086 bp Feature: gene Location: 5345283-5345771 bp Ori: ALJ43844.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5345619-5345757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534561 9-5345757 bp Feature: gene Location: 5346656-5347825 bp Ori: ALJ43845.1 Feature: domain Description: KOG1378 Location: 5346767-5347679 bp Feature: domain Description: KOG1 378 Location: 5346767-5347679 bp Feature: gene Location: 5347917-5349785 bp Ori: ALJ43846.1 Feature: domain Description: FAD_oxidored Location: 5348481-5349690 bp Feature: domain Description: FAD_oxidored Location: 5348481 -5349690 bp 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Associated domains:myRT DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3875 (pfam12991), RVT_N (pfam13655), GIIM (pfam08388), DUF3876 (pfam12992), DUF4133 (pfam13571)
YbdN (COG3969), RVT-DGRs, Avd_like (cd16376), Smc (COG1196), rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DUF3320 (pfam11784)
RVT-Retrons, DUF4134 (pfam13572), BACON (pfam13004), KOG1378 (KOG1378, Purple acid phosphatase ), FAD_oxidored (pfam12831)