myRT

myRT report for GCA_001314995.1_ASM131499v1

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Seq: CP012938.1 Bacteroides ovatus strain ATCC 8483, complete genome (6472489 bp)
Overview 1 RT 1: 528121-531652 bp 2 RT 2: 3041227-3047550 bp 3 RT 3: 3951776-3963734 bp 4 RT 4: 5427163-5436927 bp 5 RT 5: 5962503-5974779 bp Neighborhood of RT #1 [528121, 531652] DUF1566 Avd_like RVT-DGRs Neighborhood of RT #2 [3041227, 3047585] DUF4141 DUF3876 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G DUF4133 Neighborhood of RT #3 [3951776, 3963748] COG3292 COG3292 COG3292 Reg_prop COG3292 Y_Y_Y BaeS PRK15347 YesN DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM GH97_N Glyco_hydro_97 GH97_C Neighborhood of RT #4 [5427163, 5436935] N6_Mtase COG4646 RVT_N RVT-GII GIIM BcsQ Neighborhood of RT #5 [5962503, 5974895] PDDEXK_2 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 528121-528930 bp Ori: ALJ45101.1 Feature: domain Description: DUF1566 Location: 528652-528901 bp Feature: domain Description: DUF1 566 Location: 528652-528901 bp Feature: gene Location: 529077-529484 bp Ori: ALJ45102.1 Feature: domain Description: Avd_like Location: 529110-529419 bp Feature: domain Description: Avd_like Location: 5291 1 0-52941 9 bp Feature: gene Location: 529499-530920 bp Ori: ALJ45103.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 529874-530597 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 529874-530597 bp Feature: gene Location: 530883-531161 bp Feature: gene Location: 531365-531652 bp Feature: gene Location: 3041227-3041871 bp Ori: ALJ47115.1 Feature: domain Description: DUF4141 Location: 3041257-3041410 bp Feature: domain Description: DUF41 41 Location: 3041 257-3041 41 0 bp Feature: gene Location: 3041868-3042227 bp Ori: ALJ47116.1 Feature: domain Description: DUF3876 Location: 3041937-3042210 bp Feature: domain Description: DUF3876 Location: 3041 937-304221 0 bp Feature: gene Location: 3042477-3044300 bp Ori: ALJ47117.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3042741-3043563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3042741 -3043563 bp Feature: domain Description: Intron_maturas2 Location: 3043728-3043980 bp Feature: domain Description: Intron_maturas2 Location: 3043728-3043980 bp Feature: domain Description: HNHc Note: nucleases Location: 3044091-3044262 bp Feature: domain Description: HNHc Note: nucleases Location: 3044091 -3044262 bp Feature: gene Location: 3044869-3047268 bp Ori: ALJ47118.1 Feature: domain Description: Bac_Flav_CT_G Location: 3044872-3047257 bp Feature: domain Description: Bac_Flav_CT_G Location: 3044872-3047257 bp Feature: gene Location: 3047265-3047585 bp Ori: ALJ47119.1 Feature: domain Description: DUF4133 Location: 3047280-3047550 bp Feature: domain Description: DUF41 33 Location: 3047280-3047550 bp Feature: gene Location: 3951776-3955792 bp Ori: ALJ47770.1 Gene: todS_10 Feature: domain Description: COG3292 Location: 3951839-3952010 bp Feature: domain Description: COG3292 Location: 3951 839-395201 0 bp Feature: domain Description: COG3292 Location: 3952046-3952346 bp Feature: domain Description: COG3292 Location: 3952046-3952346 bp Feature: domain Description: COG3292 Location: 3952439-3952682 bp Feature: domain Description: COG3292 Location: 3952439-3952682 bp Feature: domain Description: Reg_prop Location: 3952715-3952766 bp Feature: domain Description: Reg_prop Location: 395271 5-3952766 bp Feature: domain Description: COG3292 Location: 3952997-3953579 bp Feature: domain Description: COG3292 Location: 3952997-3953579 bp Feature: domain Description: Y_Y_Y Location: 3953903-3954050 bp Feature: domain Description: Y_Y_Y Location: 3953903-3954050 bp Feature: domain Description: BaeS Location: 3954176-3954929 bp Feature: domain Description: BaeS Location: 39541 76-3954929 bp Feature: domain Description: PRK15347 Location: 3955040-3955373 bp Feature: domain Description: PRK1 5347 Location: 3955040-3955373 bp Feature: domain Description: YesN Location: 3955478-3955778 bp Feature: domain Description: YesN Location: 3955478-3955778 bp Feature: gene Location: 3955831-3956229 bp Ori: ALJ47771.1 Feature: domain Description: DDE_Tnp_IS66 Location: 3955840-3956071 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3955840-3956071 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3956092-3956212 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3956092-395621 2 bp Feature: gene Location: 3956365-3958032 bp Ori: ALJ47772.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 3956419-3956662 bp Feature: domain Description: RVT_N Location: 395641 9-3956662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3956707-3957355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3956707-3957355 bp Feature: domain Description: GIIM Note: maturase Location: 3957409-3957640 bp Feature: domain Description: GIIM Note: maturase Location: 3957409-3957640 bp Feature: gene Location: 3959375-3961747 bp Feature: gene Location: 3961754-3963748 bp Ori: ALJ47774.1 Feature: domain Description: GH97_N Location: 3961829-3962633 bp Feature: domain Description: GH97_N Location: 3961 829-3962633 bp Feature: domain Description: Glyco_hydro_97 Location: 3962648-3963443 bp Feature: domain Description: Glyco_hydro_97 Location: 3962648-3963443 bp Feature: domain Description: GH97_C Location: 3963449-3963734 bp Feature: domain Description: GH97_C Location: 3963449-3963734 bp Feature: gene Location: 5427163-5427795 bp Feature: gene Location: 5428384-5432397 bp Ori: ALJ48813.1 Feature: domain Description: N6_Mtase Location: 5428648-5429284 bp Feature: domain Description: N6_Mtase Location: 5428648-5429284 bp Feature: domain Description: COG4646 Location: 5430049-5431783 bp Feature: domain Description: COG4646 Location: 5430049-5431 783 bp Feature: gene Location: 5433054-5434721 bp Ori: ALJ48814.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 5433108-5433351 bp Feature: domain Description: RVT_N Location: 54331 08-5433351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5433396-5434044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5433396-5434044 bp Feature: domain Description: GIIM Note: maturase Location: 5434098-5434329 bp Feature: domain Description: GIIM Note: maturase Location: 5434098-5434329 bp Feature: gene Location: 5434705-5435820 bp Feature: gene Location: 5436180-5436935 bp Ori: ALJ48816.1 Gene: soj_1 Feature: domain Description: BcsQ Location: 5436183-5436927 bp Feature: domain Description: BcsQ Location: 54361 83-5436927 bp Feature: gene Location: 5962503-5963327 bp Ori: ALJ49175.1 Feature: domain Description: PDDEXK_2 Location: 5962524-5963202 bp Feature: domain Description: PDDEXK_2 Location: 5962524-5963202 bp Feature: gene Location: 5963590-5965701 bp Feature: gene Location: 5965907-5967037 bp Ori: ALJ49177.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5966228-5966771 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5966228-5966771 bp Feature: gene Location: 5967039-5972924 bp Ori: ALJ49178.1 Gene: recD2_4 Feature: domain Description: DUF4011 Location: 5968197-5968710 bp Feature: domain Description: DUF401 1 Location: 59681 97-596871 0 bp Feature: domain Description: DEXXQc_SF1 Location: 5969049-5969910 bp Feature: domain Description: DEXXQc_SF1 Location: 5969049-596991 0 bp Feature: domain Description: DEXXQc_SF1 Location: 5970477-5971236 bp Feature: domain Description: DEXXQc_SF1 Location: 5970477-5971 236 bp Feature: domain Description: TIGR00376 Location: 5971365-5971755 bp Feature: domain Description: TIGR00376 Location: 5971 365-5971 755 bp Feature: domain Description: MTES_1575 Location: 5971908-5972193 bp Feature: domain Description: MTES_1 575 Location: 5971 908-59721 93 bp Feature: domain Description: DUF3320 Location: 5972433-5972574 bp Feature: domain Description: DUF3320 Location: 5972433-5972574 bp Feature: gene Location: 5973093-5974895 bp Ori: ALJ49179.1 Gene: rpsA_2 Feature: domain Description: rpsA Location: 5973162-5974779 bp Feature: domain Description: rpsA Location: 59731 62-5974779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, DUF4141 (pfam13605), DUF3876 (pfam12992), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_G (TIGR03783), DUF4133 (pfam13571)
COG3292 (Periplasmic ligand-binding sensor domain ), Reg_prop (pfam07494), Y_Y_Y (pfam07495), BaeS (COG0642), PRK15347 (two component system sensor kinase), YesN (COG4753), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), GIIM (pfam08388)
GH97_N (pfam14508), Glyco_hydro_97 (pfam10566), GH97_C (pfam14509), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), BcsQ (COG1192), PDDEXK_2 (pfam12784), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043)
TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)