myRT

myRT report for GCA_001318345.1_ASM131834v1

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Seq: CP012801.1 Bacteroides cellulosilyticus strain WH2, complete genome (7084828 bp)
Overview 1 RT 1: 114157-119661 bp 2 RT 2: 4060845-4069120 bp 3 RT 3: 4875251-4880784 bp 4 RT 4: 5359766-5364945 bp Neighborhood of RT #1 [114157, 119702] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Neighborhood of RT #2 [4060845, 4069485] DUF4890 RVT-GII GIIM LacZ Alginate_lyase Hepar_II_III Neighborhood of RT #3 [4875251, 4880804] DUF3876 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Neighborhood of RT #4 [5359766, 5364950] HptA MFS_DtpA_like RVT-Retrons secD COG1237 Feature: gene Location: 114157-114471 bp Ori: CP012801.1_114157_114471_- Feature: domain Description: DUF3876 Location: 114211-114460 bp Feature: domain Description: DUF3876 Location: 1 1 421 1 -1 1 4460 bp Feature: gene Location: 114486-116873 bp Ori: CP012801.1_114486_116873_- Gene: virB4_1 Feature: domain Description: Bac_Flav_CT_G Location: 114606-116865 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 1 4606-1 1 6865 bp Feature: gene Location: 116854-118530 bp Ori: CP012801.1_116854_118530_- Gene: ltrA_1 Feature: domain Description: RVT_N Location: 116908-117151 bp Feature: domain Description: RVT_N Location: 1 1 6908-1 1 71 51 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117196-117844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 71 96-1 1 7844 bp Feature: domain Description: GIIM Note: maturase Location: 117895-118129 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 7895-1 1 81 29 bp Feature: gene Location: 119137-119382 bp Ori: CP012801.1_119137_119382_- Feature: domain Description: Bac_Flav_CT_G Location: 119140-119365 bp Feature: domain Description: Bac_Flav_CT_G Location: 1 1 91 40-1 1 9365 bp Feature: gene Location: 119379-119702 bp Ori: CP012801.1_119379_119702_- Feature: domain Description: DUF4133 Location: 119394-119661 bp Feature: domain Description: DUF41 33 Location: 1 1 9394-1 1 9661 bp Feature: gene Location: 4060845-4061747 bp Feature: gene Location: 4062230-4062766 bp Ori: CP012801.1_4062230_4062766_+ Feature: domain Description: DUF4890 Location: 4062332-4062698 bp Feature: domain Description: DUF4890 Location: 4062332-4062698 bp Feature: gene Location: 4063272-4064672 bp Ori: CP012801.1_4063272_4064672_+ Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4063596-4064211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4063596-406421 1 bp Feature: domain Description: GIIM Note: maturase Location: 4064265-4064496 bp Feature: domain Description: GIIM Note: maturase Location: 4064265-4064496 bp Feature: gene Location: 4064779-4067565 bp Ori: CP012801.1_4064779_4067565_- Gene: lacZ_17 Feature: domain Description: LacZ Location: 4064860-4066123 bp Feature: domain Description: LacZ Location: 4064860-40661 23 bp Feature: gene Location: 4067575-4069485 bp Ori: CP012801.1_4067575_4069485_- Feature: domain Description: Alginate_lyase Location: 4067968-4068487 bp Feature: domain Description: Alginate_lyase Location: 4067968-4068487 bp Feature: domain Description: Hepar_II_III Location: 4068739-4069120 bp Feature: domain Description: Hepar_II_III Location: 4068739-40691 20 bp Feature: gene Location: 4875251-4875613 bp Ori: CP012801.1_4875251_4875613_- Feature: domain Description: DUF3876 Location: 4875317-4875587 bp Feature: domain Description: DUF3876 Location: 487531 7-4875587 bp Feature: gene Location: 4875790-4876875 bp Ori: CP012801.1_4875790_4876875_- Gene: virB4_3 Feature: domain Description: Bac_Flav_CT_G Location: 4875919-4876867 bp Feature: domain Description: Bac_Flav_CT_G Location: 487591 9-4876867 bp Feature: gene Location: 4876865-4878673 bp Ori: CP012801.1_4876865_4878673_- Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4877129-4877951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48771 29-4877951 bp Feature: domain Description: Intron_maturas2 Location: 4878020-4878335 bp Feature: domain Description: Intron_maturas2 Location: 4878020-4878335 bp Feature: domain Description: HNHc Note: nucleases Location: 4878506-4878647 bp Feature: domain Description: HNHc Note: nucleases Location: 4878506-4878647 bp Feature: gene Location: 4878681-4879184 bp Feature: gene Location: 4879242-4880804 bp Ori: CP012801.1_4879242_4880804_- Feature: domain Description: Bac_Flav_CT_G Location: 4879245-4880784 bp Feature: domain Description: Bac_Flav_CT_G Location: 4879245-4880784 bp Feature: gene Location: 5359766-5360302 bp Ori: CP012801.1_5359766_5360302_- Gene: hpt Feature: domain Description: HptA Location: 5359784-5360294 bp Feature: domain Description: HptA Location: 5359784-5360294 bp Feature: gene Location: 5360342-5361940 bp Ori: CP012801.1_5360342_5361940_- Gene: dtpA_2 Feature: domain Description: MFS_DtpA_like Location: 5360423-5361911 bp Feature: domain Description: MFS_DtpA_like Location: 5360423-5361 91 1 bp Feature: gene Location: 5362152-5363273 bp Ori: CP012801.1_5362152_5363273_+ Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5362464-5363016 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5362464-536301 6 bp Feature: gene Location: 5363270-5364124 bp Ori: CP012801.1_5363270_5364124_- Feature: domain Description: secD Location: 5363465-5363741 bp Feature: domain Description: secD Location: 5363465-5363741 bp Feature: gene Location: 5364144-5364950 bp Ori: CP012801.1_5364144_5364950_- Feature: domain Description: COG1237 Location: 5364147-5364945 bp Feature: domain Description: COG1 237 Location: 53641 47-5364945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), DUF4890 (pfam16231), LacZ (COG3250), Alginate_lyase (pfam05426), Hepar_II_III (pfam07940)
Intron_maturas2 (pfam01348), HNHc (smart00507), HptA (COG0634), MFS_DtpA_like (cd17346), RVT-Retrons, secD (TIGR01129), COG1237 (Metal-dependent hydrolase, beta-lactamase superfamily II )