myRT

myRT report for GCA_001417865.2_ASM141786v2

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Seq: CP013047.2 Serratia marcescens strain B3R3 plasmid unnamed1, complete sequence (123171 bp)
Overview 1 RT 1: 46305-49946 bp Neighborhood of RT #1 [46305, 49951] HTH_LUXR RVT-UG4 PRK15260 PRK15287 Feature: gene Location: 46305-46862 bp Ori: AQT55471.1 Feature: domain Description: HTH_LUXR Location: 46662-46824 bp Feature: domain Description: HTH_LUXR Location: 46662-46824 bp Feature: gene Location: 47068-47850 bp Feature: gene Location: 47924-48835 bp Ori: ALL40508.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 48245-48683 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 48245-48683 bp Feature: gene Location: 48898-49458 bp Ori: ALL40507.1 Feature: domain Description: PRK15260 Location: 48982-49453 bp Feature: domain Description: PRK1 5260 Location: 48982-49453 bp Feature: gene Location: 49469-49951 bp Ori: ALL40506.1 Feature: domain Description: PRK15287 Location: 49493-49946 bp Feature: domain Description: PRK1 5287 Location: 49493-49946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_LUXR (smart00421), RVT-UG4, PRK15260 (fimbrial protein SteF; Provisional), PRK15287 (fimbrial minor subunit StfF)

Seq: CP013046.2 Serratia marcescens strain B3R3, complete genome (5471721 bp)
Overview 1 RT 1: 1033467-1038143 bp 2 RT 2: 4635569-4650548 bp Neighborhood of RT #1 [1033467, 1038613] PRK15287 PRK15288 RVT-UG4 RfaL Neighborhood of RT #2 [4635569, 4650559] SpoVK Adeno_shaft Adeno_shaft Invasin_D3 RVT-UG4 IAT_beta Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 Invasin_D3 PRK15386 Feature: gene Location: 1033467-1033940 bp Ori: ALL36693.1 Feature: domain Description: PRK15287 Location: 1033494-1033938 bp Feature: domain Description: PRK152 87 Location: 1033494-1033938 bp Feature: gene Location: 1033937-1034479 bp Ori: ALL36694.1 Feature: domain Description: PRK15288 Location: 1033985-1034474 bp Feature: domain Description: PRK152 88 Location: 1033985-1034474 bp Feature: gene Location: 1034472-1035437 bp Ori: ALL36695.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1034817-1035258 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1034817-10352 58 bp Feature: gene Location: 1036485-1036676 bp Feature: gene Location: 1036925-1038613 bp Ori: ALL36697.1 Feature: domain Description: RfaL Location: 1036961-1038143 bp Feature: domain Description: RfaL Location: 1036961-1038143 bp Feature: gene Location: 4635569-4637623 bp Ori: ALL39854.2 Feature: domain Description: SpoVK Location: 4636982-4637543 bp Feature: domain Description: SpoVK Location: 4636982 -4637543 bp Feature: gene Location: 4638161-4640254 bp Ori: ALL39855.1 Feature: domain Description: Adeno_shaft Location: 4638488-4638557 bp Feature: domain Description: Adeno_shaft Location: 4638488-4638557 bp Feature: domain Description: Adeno_shaft Location: 4638569-4638653 bp Feature: domain Description: Adeno_shaft Location: 4638569-4638653 bp Feature: domain Description: Invasin_D3 Location: 4639232-4639454 bp Feature: domain Description: Invasin_D3 Location: 46392 32 -4639454 bp Feature: gene Location: 4640878-4641987 bp Ori: ALL39856.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4641235-4641679 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 46412 35-4641679 bp Feature: gene Location: 4642040-4649434 bp Ori: ALL39857.2 Feature: domain Description: IAT_beta Location: 4642361-4643180 bp Feature: domain Description: IAT_beta Location: 4642 361-4643180 bp Feature: domain Description: Invasin_D3 Location: 4643513-4643789 bp Feature: domain Description: Invasin_D3 Location: 4643513-4643789 bp Feature: domain Description: Invasin_D3 Location: 4643831-4644152 bp Feature: domain Description: Invasin_D3 Location: 4643831-4644152 bp Feature: domain Description: Invasin_D3 Location: 4644173-4644425 bp Feature: domain Description: Invasin_D3 Location: 4644173-464442 5 bp Feature: domain Description: Invasin_D3 Location: 4644464-4644716 bp Feature: domain Description: Invasin_D3 Location: 4644464-4644716 bp Feature: domain Description: Invasin_D3 Location: 4644755-4645007 bp Feature: domain Description: Invasin_D3 Location: 4644755-4645007 bp Feature: domain Description: Invasin_D3 Location: 4645046-4645298 bp Feature: domain Description: Invasin_D3 Location: 4645046-46452 98 bp Feature: domain Description: Invasin_D3 Location: 4645337-4645589 bp Feature: domain Description: Invasin_D3 Location: 4645337-4645589 bp Feature: domain Description: Invasin_D3 Location: 4645628-4645880 bp Feature: domain Description: Invasin_D3 Location: 464562 8-4645880 bp Feature: domain Description: Invasin_D3 Location: 4645919-4646171 bp Feature: domain Description: Invasin_D3 Location: 4645919-4646171 bp Feature: domain Description: Invasin_D3 Location: 4646210-4646462 bp Feature: domain Description: Invasin_D3 Location: 46462 10-4646462 bp Feature: domain Description: Invasin_D3 Location: 4646501-4646753 bp Feature: domain Description: Invasin_D3 Location: 4646501-4646753 bp Feature: domain Description: Invasin_D3 Location: 4646792-4647044 bp Feature: domain Description: Invasin_D3 Location: 4646792 -4647044 bp Feature: domain Description: Invasin_D3 Location: 4647083-4647335 bp Feature: domain Description: Invasin_D3 Location: 4647083-4647335 bp Feature: domain Description: Invasin_D3 Location: 4647374-4647626 bp Feature: domain Description: Invasin_D3 Location: 4647374-464762 6 bp Feature: domain Description: Invasin_D3 Location: 4647665-4647917 bp Feature: domain Description: Invasin_D3 Location: 4647665-4647917 bp Feature: domain Description: Invasin_D3 Location: 4647956-4648208 bp Feature: domain Description: Invasin_D3 Location: 4647956-46482 08 bp Feature: domain Description: Invasin_D3 Location: 4648247-4648499 bp Feature: domain Description: Invasin_D3 Location: 46482 47-4648499 bp Feature: domain Description: Invasin_D3 Location: 4648538-4648781 bp Feature: domain Description: Invasin_D3 Location: 4648538-4648781 bp Feature: gene Location: 4649825-4650559 bp Ori: ALL39858.1 Feature: domain Description: PRK15386 Location: 4650275-4650548 bp Feature: domain Description: PRK15386 Location: 46502 75-4650548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15287 (fimbrial minor subunit StfF), PRK15288 (putative minor fimbrial subunit StfG; Provisional), RVT-UG4, RfaL (COG3307), SpoVK (COG0464), Adeno_shaft (pfam00608), Invasin_D3 (pfam09134), IAT_beta (pfam11924), PRK15386 (type III secretion effector GogB)