myRT

myRT report for GCA_001443605.1_ASM144360v1

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Seq: CP013118.1 Salinivirga cyanobacteriivorans strain L21-Spi-D4 chromosome, complete genome (4812386 bp)
Overview 1 RT 1: 511555-520338 bp 2 RT 2: 1069920-1074089 bp 3 RT 3: 3597641-3601178 bp 4 RT 4: 4400613-4416636 bp 5 RT 5: 4442022-4446766 bp Neighborhood of RT #1 [511555, 520994] RVT-GII GIIM PRK09183 COG4584 COG4584 Neighborhood of RT #2 [1069920, 1074127] RAMA RVT-GII GIIM COG3177 Neighborhood of RT #3 [3597641, 3601393] 23S_rRNA_IVP_like GIY-YIG_SLX1_like RVT-DGRs YwqK YwqK DivIC Neighborhood of RT #4 [4400613, 4416636] ParD RVT-GII HTH_23 COG4584 PRK06526 RVT-GII GIIM COG2361 COG1669 RVT-GII GIIM BOF RVT-GII GIIM CarbopepD_reg_2 ligand_gated_channel ligand_gated_channel Neighborhood of RT #5 [4442022, 4446930] RVT-GII GIIM DEDD_Tnp_IS110 COG3547 Feature: gene Location: 511555-515055 bp Feature: gene Location: 515042-517093 bp Feature: gene Location: 517367-518509 bp Ori: ALO14105.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517370-517964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 7370-51 7964 bp Feature: domain Description: GIIM Note: maturase Location: 518036-518252 bp Feature: domain Description: GIIM Note: maturase Location: 51 8036-51 8252 bp Feature: gene Location: 518682-519431 bp Ori: ALO14106.1 Gene: dnaA_2 Feature: domain Description: PRK09183 Location: 518700-519414 bp Feature: domain Description: PRK091 83 Location: 51 8700-51 941 4 bp Feature: gene Location: 519435-520994 bp Ori: ALO14107.1 Feature: domain Description: COG4584 Location: 519465-519570 bp Feature: domain Description: COG4584 Location: 51 9465-51 9570 bp Feature: domain Description: COG4584 Location: 519789-520338 bp Feature: domain Description: COG4584 Location: 51 9789-520338 bp Feature: gene Location: 1069920-1070849 bp Ori: ALO14555.1 Feature: domain Description: RAMA Location: 1070526-1070844 bp Feature: domain Description: RAMA Location: 1 070526-1 070844 bp Feature: gene Location: 1070862-1071056 bp Feature: gene Location: 1071244-1072272 bp Ori: ALO14557.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1071409-1072024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 071 409-1 072024 bp Feature: domain Description: GIIM Note: maturase Location: 1072084-1072267 bp Feature: domain Description: GIIM Note: maturase Location: 1 072084-1 072267 bp Feature: gene Location: 1072889-1073029 bp Feature: gene Location: 1073048-1074127 bp Ori: ALO14559.1 Feature: domain Description: COG3177 Location: 1073099-1074089 bp Feature: domain Description: COG31 77 Location: 1 073099-1 074089 bp Feature: gene Location: 3597641-3597811 bp Ori: ALO16600.1 Feature: domain Description: 23S_rRNA_IVP_like Location: 3597653-3597809 bp Feature: domain Description: 23S_rRNA_IVP_like Location: 3597653-3597809 bp Feature: gene Location: 3598247-3598504 bp Ori: ALO16601.1 Feature: domain Description: GIY-YIG_SLX1_like Location: 3598259-3598457 bp Feature: domain Description: GIY-YIG_SLX1 _like Location: 3598259-3598457 bp Feature: gene Location: 3598689-3599858 bp Ori: ALO16602.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3598857-3599625 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3598857-3599625 bp Feature: gene Location: 3600175-3600792 bp Ori: ALO16603.1 Feature: domain Description: YwqK Location: 3600283-3600439 bp Feature: domain Description: YwqK Location: 3600283-3600439 bp Feature: domain Description: YwqK Location: 3600490-3600703 bp Feature: domain Description: YwqK Location: 3600490-3600703 bp Feature: gene Location: 3601010-3601393 bp Ori: ALO16604.1 Feature: domain Description: DivIC Location: 3601043-3601178 bp Feature: domain Description: DivIC Location: 3601 043-3601 1 78 bp Feature: gene Location: 4400613-4400852 bp Ori: ALO17207.1 Feature: domain Description: ParD Location: 4400616-4400826 bp Feature: domain Description: ParD Location: 440061 6-4400826 bp Feature: gene Location: 4401241-4401534 bp Feature: gene Location: 4401673-4402251 bp Ori: ALO17209.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4401886-4402219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4401 886-440221 9 bp Feature: gene Location: 4402328-4403863 bp Ori: ALO17210.1 Feature: domain Description: HTH_23 Location: 4402355-4402448 bp Feature: domain Description: HTH_23 Location: 4402355-4402448 bp Feature: domain Description: COG4584 Location: 4402649-4403207 bp Feature: domain Description: COG4584 Location: 4402649-4403207 bp Feature: gene Location: 4403871-4404629 bp Ori: ALO17211.1 Gene: dnaC_3 Feature: domain Description: PRK06526 Location: 4403895-4404609 bp Feature: domain Description: PRK06526 Location: 4403895-4404609 bp Feature: gene Location: 4404752-4405636 bp Ori: ALO17212.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4404806-4405091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4404806-4405091 bp Feature: domain Description: GIIM Note: maturase Location: 4405163-4405379 bp Feature: domain Description: GIIM Note: maturase Location: 44051 63-4405379 bp Feature: gene Location: 4405747-4406103 bp Ori: ALO17213.1 Feature: domain Description: COG2361 Location: 4405759-4406095 bp Feature: domain Description: COG2361 Location: 4405759-4406095 bp Feature: gene Location: 4406105-4406395 bp Ori: ALO17214.1 Feature: domain Description: COG1669 Location: 4406117-4406390 bp Feature: domain Description: COG1 669 Location: 44061 1 7-4406390 bp Feature: gene Location: 4406773-4407066 bp Feature: gene Location: 4407205-4408578 bp Ori: ALO17216.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4407418-4408033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 440741 8-4408033 bp Feature: domain Description: GIIM Note: maturase Location: 4408105-4408321 bp Feature: domain Description: GIIM Note: maturase Location: 44081 05-4408321 bp Feature: gene Location: 4408681-4409349 bp Feature: gene Location: 4409735-4410028 bp Feature: gene Location: 4411301-4411600 bp Ori: ALO17220.1 Feature: domain Description: BOF Location: 4411373-4411592 bp Feature: domain Description: BOF Location: 441 1 373-441 1 592 bp Feature: gene Location: 4411940-4412233 bp Feature: gene Location: 4412372-4413745 bp Ori: ALO17222.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4412585-4413200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441 2585-441 3200 bp Feature: domain Description: GIIM Note: maturase Location: 4413272-4413488 bp Feature: domain Description: GIIM Note: maturase Location: 441 3272-441 3488 bp Feature: gene Location: 4414094-4416310 bp Ori: ALO17223.1 Feature: domain Description: CarbopepD_reg_2 Location: 4414163-4414421 bp Feature: domain Description: CarbopepD_reg_2 Location: 441 41 63-441 4421 bp Feature: domain Description: ligand_gated_channel Location: 4414472-4414955 bp Feature: domain Description: ligand_gated_channel Location: 441 4472-441 4955 bp Feature: domain Description: ligand_gated_channel Location: 4415156-4416293 bp Feature: domain Description: ligand_gated_channel Location: 441 51 56-441 6293 bp Feature: gene Location: 4416346-4416636 bp Feature: gene Location: 4442022-4442171 bp Feature: gene Location: 4442757-4443050 bp Feature: gene Location: 4443189-4444562 bp Ori: ALO17256.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4443402-4444017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4443402-444401 7 bp Feature: domain Description: GIIM Note: maturase Location: 4444089-4444305 bp Feature: domain Description: GIIM Note: maturase Location: 4444089-4444305 bp Feature: gene Location: 4444633-4445502 bp Feature: gene Location: 4445545-4446930 bp Ori: ALO17258.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 4445605-4446025 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 4445605-4446025 bp Feature: domain Description: COG3547 Location: 4446433-4446766 bp Feature: domain Description: COG3547 Location: 4446433-4446766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase ), RAMA (pfam18755), COG3177 (Fic family protein ), 23S_rRNA_IVP_like (cd16377), GIY-YIG_SLX1_like (cd10449), RVT-DGRs, YwqK (COG2849)
DivIC (pfam04977), ParD (pfam09386), HTH_23 (pfam13384), PRK06526 (transposase; Provisional), COG2361 (Uncharacterized conserved protein, contains HEPN domain ), COG1669 (Predicted nucleotidyltransferase ), BOF (pfam04076), CarbopepD_reg_2 (pfam13715), ligand_gated_channel (cd01347), DEDD_Tnp_IS110 (pfam01548)
COG3547 (Transposase )