myRT

myRT report for GCA_001444365.1_ASM144436v1

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Seq: CP013145.1 Colwellia sp. MT41, complete genome (4337945 bp)
Overview 1 RT 1: 128297-138134 bp 2 RT 2: 328256-335515 bp 3 RT 3: 601416-607285 bp 4 RT 4: 1648018-1660381 bp Neighborhood of RT #1 [128297, 138508] PKD PKD FN3 PKD PKD LRR_4 LRR_4 PKD DUF1566 Avd_like RVT-DGRs DUF1566 RAYT Neighborhood of RT #2 [328256, 335541] PEP_TPR_lipo PEP-CTERM RVT-GII GIIM CytC553 YbbK Neighborhood of RT #3 [601416, 607341] cyclophilin_EcCYP_like RVT-GII GIIM DDE_Tnp_1 Cytochrom_c3_2 Neighborhood of RT #4 [1648018, 1660395] DUF2158 RVT-GII GIIM UPF0547 UPF0547 RVT-GII GIIM RVT-GII GIIM SHOCT Feature: gene Location: 128297-134386 bp Ori: ALO33366.1 Feature: domain Description: PKD Location: 128687-128912 bp Feature: domain Description: PKD Location: 1 28687-1 2891 2 bp Feature: domain Description: PKD Location: 128972-129191 bp Feature: domain Description: PKD Location: 1 28972-1 291 91 bp Feature: domain Description: FN3 Location: 129212-129503 bp Feature: domain Description: FN3 Location: 1 2921 2-1 29503 bp Feature: domain Description: PKD Location: 131840-132065 bp Feature: domain Description: PKD Location: 1 31 840-1 32065 bp Feature: domain Description: PKD Location: 132122-132353 bp Feature: domain Description: PKD Location: 1 321 22-1 32353 bp Feature: domain Description: LRR_4 Location: 133094-133208 bp Feature: domain Description: LRR_4 Location: 1 33094-1 33208 bp Feature: domain Description: LRR_4 Location: 133220-133310 bp Feature: domain Description: LRR_4 Location: 1 33220-1 3331 0 bp Feature: domain Description: PKD Location: 133418-133655 bp Feature: domain Description: PKD Location: 1 3341 8-1 33655 bp Feature: domain Description: DUF1566 Location: 133913-134375 bp Feature: domain Description: DUF1 566 Location: 1 3391 3-1 34375 bp Feature: gene Location: 134408-134791 bp Ori: ALO33367.1 Feature: domain Description: Avd_like Location: 134432-134744 bp Feature: domain Description: Avd_like Location: 1 34432-1 34744 bp Feature: gene Location: 135041-136708 bp Ori: ALO33368.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 135323-136100 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 35323-1 361 00 bp Feature: gene Location: 136728-137249 bp Ori: ALO33369.1 Feature: domain Description: DUF1566 Location: 136860-137238 bp Feature: domain Description: DUF1 566 Location: 1 36860-1 37238 bp Feature: gene Location: 137534-138508 bp Ori: ALO33370.1 Feature: domain Description: RAYT Location: 137576-138134 bp Feature: domain Description: RAYT Location: 1 37576-1 381 34 bp Feature: gene Location: 328256-331045 bp Ori: ALO33525.1 Feature: domain Description: PEP_TPR_lipo Location: 328274-330980 bp Feature: domain Description: PEP_TPR_lipo Location: 328274-330980 bp Feature: gene Location: 331245-331889 bp Ori: ALO33526.1 Feature: domain Description: PEP-CTERM Location: 331812-331881 bp Feature: domain Description: PEP-CTERM Location: 331 81 2-331 881 bp Feature: gene Location: 332759-334024 bp Ori: ALO33527.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332972-333590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 332972-333590 bp Feature: domain Description: GIIM Note: maturase Location: 333638-333857 bp Feature: domain Description: GIIM Note: maturase Location: 333638-333857 bp Feature: gene Location: 334369-334671 bp Ori: ALO33528.1 Feature: domain Description: CytC553 Location: 334378-334669 bp Feature: domain Description: CytC553 Location: 334378-334669 bp Feature: gene Location: 335062-335541 bp Ori: ALO33529.1 Feature: domain Description: YbbK Location: 335089-335515 bp Feature: domain Description: YbbK Location: 335089-33551 5 bp Feature: gene Location: 601416-602207 bp Ori: ALO33727.1 Feature: domain Description: cyclophilin_EcCYP_like Location: 601542-601986 bp Feature: domain Description: cyclophilin_EcCYP_like Location: 601 542-601 986 bp Feature: gene Location: 602555-602950 bp Feature: gene Location: 603794-605047 bp Ori: ALO33729.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604007-604613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604007-60461 3 bp Feature: domain Description: GIIM Note: maturase Location: 604661-604880 bp Feature: domain Description: GIIM Note: maturase Location: 604661 -604880 bp Feature: gene Location: 605953-607134 bp Ori: ALO33730.1 Feature: domain Description: DDE_Tnp_1 Location: 606355-606919 bp Feature: domain Description: DDE_Tnp_1 Location: 606355-60691 9 bp Feature: gene Location: 607156-607341 bp Ori: ALO33731.1 Feature: domain Description: Cytochrom_c3_2 Location: 607174-607285 bp Feature: domain Description: Cytochrom_c3_2 Location: 6071 74-607285 bp Feature: gene Location: 1648018-1648209 bp Ori: ALO34504.1 Feature: domain Description: DUF2158 Location: 1648042-1648183 bp Feature: domain Description: DUF21 58 Location: 1 648042-1 6481 83 bp Feature: gene Location: 1648478-1648732 bp Feature: gene Location: 1648843-1650189 bp Ori: ALO34506.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1649125-1649743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6491 25-1 649743 bp Feature: domain Description: GIIM Note: maturase Location: 1649791-1649995 bp Feature: domain Description: GIIM Note: maturase Location: 1 649791 -1 649995 bp Feature: gene Location: 1650285-1650833 bp Feature: gene Location: 1650953-1651225 bp Ori: ALO34508.1 Feature: domain Description: UPF0547 Location: 1650959-1650989 bp Feature: domain Description: UPF0547 Location: 1 650959-1 650989 bp Feature: domain Description: UPF0547 Location: 1651025-1651061 bp Feature: domain Description: UPF0547 Location: 1 651 025-1 651 061 bp Feature: gene Location: 1652314-1652601 bp Feature: gene Location: 1653813-1654067 bp Feature: gene Location: 1654193-1655524 bp Ori: ALO36601.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1654460-1655078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 654460-1 655078 bp Feature: domain Description: GIIM Note: maturase Location: 1655126-1655330 bp Feature: domain Description: GIIM Note: maturase Location: 1 6551 26-1 655330 bp Feature: gene Location: 1655927-1656178 bp Feature: gene Location: 1656328-1656699 bp Feature: gene Location: 1656952-1657206 bp Feature: gene Location: 1657332-1658663 bp Ori: ALO36602.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1657599-1658217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 657599-1 65821 7 bp Feature: domain Description: GIIM Note: maturase Location: 1658265-1658469 bp Feature: domain Description: GIIM Note: maturase Location: 1 658265-1 658469 bp Feature: gene Location: 1659091-1659279 bp Feature: gene Location: 1659904-1660395 bp Ori: ALO34514.1 Feature: domain Description: SHOCT Location: 1660303-1660381 bp Feature: domain Description: SHOCT Location: 1 660303-1 660381 bp Sorry, your browser does not support 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Associated domains:myRT PKD (smart00089), FN3 (smart00060), LRR_4 (pfam12799), DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, RAYT (COG1943), PEP_TPR_lipo (TIGR02917), PEP-CTERM, RVT-GII
GIIM (pfam08388), CytC553 (COG2863), YbbK (COG1683), cyclophilin_EcCYP_like (cd01920), DDE_Tnp_1 (pfam01609), Cytochrom_c3_2 (pfam14537), DUF2158 (pfam09926), UPF0547 (pfam10571), SHOCT (pfam09851)