myRT

myRT report for GCA_001447155.2_ASM144715v2

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Seq: CP014754.1 Marinobacter sp. LQ44 chromosome, complete genome (4435564 bp)
Overview 1 RT 1: 1016916-1026145 bp 2 RT 2: 1279265-1284361 bp 3 RT 3: 1502492-1508811 bp 4 RT 4: 2244553-2253145 bp 5 RT 5: 2310516-2316281 bp 6 RT 6: 3052139-3056756 bp 7 RT 7: 3467614-3472956 bp 8 RT 8: 3492678-3500161 bp 9 RT 9: 3590890-3595929 bp 10 RT 10: 4296823-4303999 bp Neighborhood of RT #1 [1016916, 1026147] PRK14014 MalT RVT-GII GIIM DUF1329 DUF1302 Neighborhood of RT #2 [1279265, 1284600] COG3963 cspE RVT-GII GIIM PRK15435 UbiG Neighborhood of RT #3 [1502492, 1508825] NarK NarK RVT-GII GIIM NarK USP_Like Neighborhood of RT #4 [2244553, 2253150] MFS_NIMT_CynX_like SpecificRecomb RVT-GII GIIM RVT-GII GIIM PLPDE_III_ODC Neighborhood of RT #5 [2310516, 2316301] PRK10477 VOC_like RVT-GII GIIM Mb_like DinG DinG Neighborhood of RT #6 [3052139, 3056761] FN3 Apolipoprotein RVT-GII GIIM DUF4124 DUF5082 DUF5082 pyrE Neighborhood of RT #7 [3467614, 3472964] PBP2_FutA1_ilke PHA02517 RVT-GII GIIM InsE Neighborhood of RT #8 [3492678, 3500166] rbgA CpxP_like RVT-GII GIIM COG1033 Tar Neighborhood of RT #9 [3590890, 3595943] trmD rplS RVT-GII GIIM xerD PRK10877 Neighborhood of RT #10 [4296823, 4304004] clpP clpX RVT-GII GIIM PRK10787 PRK10664 Feature: gene Location: 1016916-1017812 bp Ori: AMQ88042.1 Feature: domain Description: PRK14014 Location: 1016919-1017804 bp Feature: domain Description: PRK1 401 4 Location: 1 01 691 9-1 01 7804 bp Feature: gene Location: 1017813-1020500 bp Ori: AMQ88043.1 Feature: domain Description: MalT Location: 1017915-1020498 bp Feature: domain Description: MalT Location: 1 01 791 5-1 020498 bp Feature: gene Location: 1020785-1022062 bp Ori: AMQ88044.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020998-1021616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 020998-1 021 61 6 bp Feature: domain Description: GIIM Note: maturase Location: 1021664-1021889 bp Feature: domain Description: GIIM Note: maturase Location: 1 021 664-1 021 889 bp Feature: gene Location: 1022845-1024206 bp Ori: AMQ88045.1 Feature: domain Description: DUF1329 Location: 1023097-1024189 bp Feature: domain Description: DUF1 329 Location: 1 023097-1 0241 89 bp Feature: gene Location: 1024240-1026147 bp Ori: AMQ88046.1 Feature: domain Description: DUF1302 Location: 1024339-1026145 bp Feature: domain Description: DUF1 302 Location: 1 024339-1 0261 45 bp Feature: gene Location: 1279265-1279876 bp Ori: AMQ88281.1 Feature: domain Description: COG3963 Location: 1279316-1279856 bp Feature: domain Description: COG3963 Location: 1 27931 6-1 279856 bp Feature: gene Location: 1280224-1280430 bp Ori: AMQ88282.1 Feature: domain Description: cspE Location: 1280227-1280428 bp Feature: domain Description: cspE Location: 1 280227-1 280428 bp Feature: gene Location: 1280528-1281805 bp Ori: AMQ88283.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1280741-1281359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 280741 -1 281 359 bp Feature: domain Description: GIIM Note: maturase Location: 1281407-1281632 bp Feature: domain Description: GIIM Note: maturase Location: 1 281 407-1 281 632 bp Feature: gene Location: 1282866-1283792 bp Ori: AMQ88284.1 Feature: domain Description: PRK15435 Location: 1282929-1283766 bp Feature: domain Description: PRK1 5435 Location: 1 282929-1 283766 bp Feature: gene Location: 1283896-1284600 bp Ori: AMQ88285.1 Feature: domain Description: UbiG Location: 1284058-1284361 bp Feature: domain Description: UbiG Location: 1 284058-1 284361 bp Feature: gene Location: 1502492-1502722 bp Feature: gene Location: 1502995-1504587 bp Ori: AMQ88476.1 Feature: domain Description: NarK Location: 1503046-1503751 bp Feature: domain Description: NarK Location: 1 503046-1 503751 bp Feature: domain Description: NarK Location: 1503832-1504564 bp Feature: domain Description: NarK Location: 1 503832-1 504564 bp Feature: gene Location: 1505376-1506653 bp Ori: AMQ88477.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1505589-1506207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 505589-1 506207 bp Feature: domain Description: GIIM Note: maturase Location: 1506255-1506480 bp Feature: domain Description: GIIM Note: maturase Location: 1 506255-1 506480 bp Feature: gene Location: 1506811-1508316 bp Ori: AMQ88478.1 Feature: domain Description: NarK Location: 1506832-1508266 bp Feature: domain Description: NarK Location: 1 506832-1 508266 bp Feature: gene Location: 1508364-1508825 bp Ori: AMQ88479.1 Feature: domain Description: USP_Like Location: 1508370-1508811 bp Feature: domain Description: USP_Like Location: 1 508370-1 50881 1 bp Feature: gene Location: 2244553-2245743 bp Ori: AMQ89072.1 Feature: domain Description: MFS_NIMT_CynX_like Location: 2244622-2245714 bp Feature: domain Description: MFS_NIMT_CynX_like Location: 2244622-224571 4 bp Feature: gene Location: 2245810-2247783 bp Feature: domain Description: SpecificRecomb Location: 2245867-2247775 bp Feature: domain Description: SpecificRecomb Location: 2245867-2247775 bp Feature: gene Location: 2247968-2249335 bp Ori: AMQ89073.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2248301-2248916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2248301 -224891 6 bp Feature: domain Description: GIIM Note: maturase Location: 2248973-2249195 bp Feature: domain Description: GIIM Note: maturase Location: 2248973-22491 95 bp Feature: gene Location: 2249793-2251070 bp Ori: AMQ89074.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2250006-2250624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2250006-2250624 bp Feature: domain Description: GIIM Note: maturase Location: 2250672-2250897 bp Feature: domain Description: GIIM Note: maturase Location: 2250672-2250897 bp Feature: gene Location: 2251688-2251972 bp Feature: gene Location: 2251975-2253150 bp Ori: AMQ89076.1 Feature: domain Description: PLPDE_III_ODC Location: 2252062-2253145 bp Feature: domain Description: PLPDE_III_ODC Location: 2252062-22531 45 bp Feature: gene Location: 2310516-2310887 bp Feature: domain Description: PRK10477 Location: 2310543-2310885 bp Feature: domain Description: PRK1 0477 Location: 231 0543-231 0885 bp Feature: gene Location: 2311024-2311395 bp Ori: AMQ89126.1 Feature: domain Description: VOC_like Location: 2311030-2311384 bp Feature: domain Description: VOC_like Location: 231 1 030-231 1 384 bp Feature: gene Location: 2311477-2312754 bp Ori: AMQ89127.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2311690-2312308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 1 690-231 2308 bp Feature: domain Description: GIIM Note: maturase Location: 2312356-2312581 bp Feature: domain Description: GIIM Note: maturase Location: 231 2356-231 2581 bp Feature: gene Location: 2313528-2313920 bp Ori: AMQ89128.1 Feature: domain Description: Mb_like Location: 2313558-2313903 bp Feature: domain Description: Mb_like Location: 231 3558-231 3903 bp Feature: gene Location: 2314043-2316301 bp Ori: AMQ89129.1 Feature: domain Description: DinG Location: 2314553-2314709 bp Feature: domain Description: DinG Location: 231 4553-231 4709 bp Feature: domain Description: DinG Location: 2314724-2316281 bp Feature: domain Description: DinG Location: 231 4724-231 6281 bp Feature: gene Location: 3052139-3052630 bp Ori: AMQ91013.1 Feature: domain Description: FN3 Location: 3052379-3052619 bp Feature: domain Description: FN3 Location: 3052379-305261 9 bp Feature: gene Location: 3052905-3053321 bp Ori: AMQ89710.1 Feature: domain Description: Apolipoprotein Location: 3052917-3053256 bp Feature: domain Description: Apolipoprotein Location: 305291 7-3053256 bp Feature: gene Location: 3054104-3055381 bp Ori: AMQ89711.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3054317-3054935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305431 7-3054935 bp Feature: domain Description: GIIM Note: maturase Location: 3054983-3055208 bp Feature: domain Description: GIIM Note: maturase Location: 3054983-3055208 bp Feature: gene Location: 3055479-3056120 bp Ori: AMQ89712.1 Feature: domain Description: DUF4124 Location: 3055536-3055725 bp Feature: domain Description: DUF41 24 Location: 3055536-3055725 bp Feature: domain Description: DUF5082 Location: 3055791-3055899 bp Feature: domain Description: DUF5082 Location: 3055791 -3055899 bp Feature: domain Description: DUF5082 Location: 3055965-3056043 bp Feature: domain Description: DUF5082 Location: 3055965-3056043 bp Feature: gene Location: 3056123-3056761 bp Ori: AMQ89713.1 Gene: pyrE Feature: domain Description: pyrE Location: 3056126-3056756 bp Feature: domain Description: pyrE Location: 30561 26-3056756 bp Feature: gene Location: 3467614-3468636 bp Ori: AMQ90057.1 Feature: domain Description: PBP2_FutA1_ilke Location: 3467692-3468631 bp Feature: domain Description: PBP2_FutA1 _ilke Location: 3467692-3468631 bp Feature: gene Location: 3469521-3470003 bp Ori: AMQ90058.1 Feature: domain Description: PHA02517 Location: 3469530-3469977 bp Feature: domain Description: PHA0251 7 Location: 3469530-3469977 bp Feature: gene Location: 3470078-3471601 bp Ori: AMQ90059.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3470351-3471083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3470351 -3471 083 bp Feature: domain Description: GIIM Note: maturase Location: 3471203-3471383 bp Feature: domain Description: GIIM Note: maturase Location: 3471 203-3471 383 bp Feature: gene Location: 3472243-3472632 bp Feature: gene Location: 3472656-3472964 bp Ori: AMQ90061.1 Feature: domain Description: InsE Location: 3472662-3472956 bp Feature: domain Description: InsE Location: 3472662-3472956 bp Feature: gene Location: 3492678-3493601 bp Ori: AMQ90081.1 Feature: domain Description: rbgA Location: 3492681-3493515 bp Feature: domain Description: rbgA Location: 3492681 -349351 5 bp Feature: gene Location: 3493841-3494284 bp Ori: AMQ91041.1 Feature: domain Description: CpxP_like Location: 3493964-3494237 bp Feature: domain Description: CpxP_like Location: 3493964-3494237 bp Feature: gene Location: 3495064-3496341 bp Ori: AMQ90082.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3495277-3495895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3495277-3495895 bp Feature: domain Description: GIIM Note: maturase Location: 3495943-3496168 bp Feature: domain Description: GIIM Note: maturase Location: 3495943-34961 68 bp Feature: gene Location: 3496420-3498897 bp Ori: AMQ90083.1 Feature: domain Description: COG1033 Location: 3496447-3498883 bp Feature: domain Description: COG1 033 Location: 3496447-3498883 bp Feature: gene Location: 3498946-3500166 bp Ori: AMQ90084.1 Feature: domain Description: Tar Location: 3499051-3500161 bp Feature: domain Description: Tar Location: 3499051 -35001 61 bp Feature: gene Location: 3590890-3591648 bp Ori: AMQ90160.1 Gene: trmD Feature: domain Description: trmD Location: 3590899-3591610 bp Feature: domain Description: trmD Location: 3590899-3591 61 0 bp Feature: gene Location: 3591674-3592030 bp Ori: AMQ90161.1 Feature: domain Description: rplS Location: 3591689-3592025 bp Feature: domain Description: rplS Location: 3591 689-3592025 bp Feature: gene Location: 3592817-3594094 bp Ori: AMQ90162.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3593030-3593648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3593030-3593648 bp Feature: domain Description: GIIM Note: maturase Location: 3593696-3593921 bp Feature: domain Description: GIIM Note: maturase Location: 3593696-3593921 bp Feature: gene Location: 3594213-3595118 bp Ori: AMQ90163.1 Feature: domain Description: xerD Location: 3594231-3595116 bp Feature: domain Description: xerD Location: 3594231 -35951 1 6 bp Feature: gene Location: 3595209-3595943 bp Ori: AMQ90164.1 Feature: domain Description: PRK10877 Location: 3595248-3595929 bp Feature: domain Description: PRK1 0877 Location: 3595248-3595929 bp Feature: gene Location: 4296823-4297458 bp Ori: AMQ90726.1 Feature: domain Description: clpP Location: 4296871-4297441 bp Feature: domain Description: clpP Location: 4296871 -4297441 bp Feature: gene Location: 4297535-4298818 bp Ori: AMQ90727.1 Feature: domain Description: clpX Location: 4297571-4298768 bp Feature: domain Description: clpX Location: 4297571 -4298768 bp Feature: gene Location: 4299607-4300884 bp Ori: AMQ90728.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4299820-4300438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4299820-4300438 bp Feature: domain Description: GIIM Note: maturase Location: 4300486-4300711 bp Feature: domain Description: GIIM Note: maturase Location: 4300486-430071 1 bp Feature: gene Location: 4301077-4303494 bp Ori: AMQ90729.1 Feature: domain Description: PRK10787 Location: 4301110-4303405 bp Feature: domain Description: PRK1 0787 Location: 4301 1 1 0-4303405 bp Feature: gene Location: 4303732-4304004 bp Ori: AMQ90730.1 Feature: domain Description: PRK10664 Location: 4303735-4303999 bp Feature: domain Description: PRK1 0664 Location: 4303735-4303999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14014 (putative acyltransferase; Provisional), MalT (COG2909), RVT-GII, GIIM (pfam08388), DUF1329 (pfam07044), DUF1302 (pfam06980), COG3963 (Phospholipid N-methyltransferase ), cspE (PRK09507), PRK15435 (bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada), UbiG (TIGR01983)
NarK (COG2223), USP_Like (cd00293), MFS_NIMT_CynX_like (cd17339), SpecificRecomb (pfam10136), PLPDE_III_ODC (cd00622), PRK10477 (outer membrane lipoprotein Blc; Provisional), VOC_like (cd16355), Mb_like, DinG (COG1199), FN3 (smart00060)
Apolipoprotein (pfam01442), DUF4124 (pfam13511), DUF5082 (pfam16888), pyrE (TIGR00336), PBP2_FutA1_ilke (cd13542), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), rbgA (PRK09563), CpxP_like (cl01482), COG1033 (Predicted exporter protein, RND superfamily )
Tar (COG0840), trmD (TIGR00088), rplS (PRK05338), xerD (PRK02436), PRK10877 (protein disulfide isomerase II DsbC; Provisional), clpP, clpX, PRK10787 (DNA-binding ATP-dependent protease La; Provisional), PRK10664 (DNA-binding protein HU-beta)