myRT

myRT report for GCA_001455995.1_MS6671.v1

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Seq: LN824133.1 Klebsiella pneumoniae genome assembly MS6671.v1, chromosome : _Chr_Kpneumoniae_MS6671 (5402900 bp)
Overview 1 RT 1: 2281914-2293969 bp 2 RT 2: 2809758-2814423 bp 3 RT 3: 3438541-3444954 bp Neighborhood of RT #1 [2281914, 2293971] Lipase_GDSL_2 PinE RVT-GII PRK10276 umuC RVT-UG11 PRK09951 PRK15110 Neighborhood of RT #2 [2809758, 2814423] PRK15417 Arr-ms RVT-GII GIIM N6_acetyl_AAC6 Neighborhood of RT #3 [3438541, 3444968] PRK10276 RVT-GII SGNH_hydrolase_like_2 Feature: gene Location: 2281914-2285066 bp Feature: domain Description: Lipase_GDSL_2 Location: 2284572-2284998 bp Feature: domain Description: Lipase_GDSL_2 Location: 2284572-2284998 bp Feature: gene Location: 2285158-2285706 bp Feature: domain Description: PinE Location: 2285161-2285698 bp Feature: domain Description: PinE Location: 22851 61 -2285698 bp Feature: gene Location: 2287098-2288585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2287503-2288193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2287503-22881 93 bp Feature: gene Location: 2288665-2289084 bp Feature: domain Description: PRK10276 Location: 2288668-2289079 bp Feature: domain Description: PRK1 0276 Location: 2288668-2289079 bp Feature: gene Location: 2289086-2290351 bp Feature: domain Description: umuC Location: 2289089-2290349 bp Feature: domain Description: umuC Location: 2289089-2290349 bp Feature: gene Location: 2290576-2290764 bp Feature: gene Location: 2291024-2291932 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 2291297-2291753 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 2291 297-2291 753 bp Feature: gene Location: 2292133-2292801 bp Feature: domain Description: PRK09951 Location: 2292136-2292799 bp Feature: domain Description: PRK09951 Location: 22921 36-2292799 bp Feature: gene Location: 2293006-2293971 bp Feature: domain Description: PRK15110 Location: 2293009-2293969 bp Feature: domain Description: PRK1 51 1 0 Location: 2293009-2293969 bp Feature: gene Location: 2809758-2810771 bp Feature: domain Description: PRK15417 Location: 2809761-2810769 bp Feature: domain Description: PRK1 541 7 Location: 2809761 -281 0769 bp Feature: gene Location: 2810944-2811396 bp Feature: domain Description: Arr-ms Location: 2811004-2811310 bp Feature: domain Description: Arr-ms Location: 281 1 004-281 1 31 0 bp Feature: gene Location: 2811477-2812730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2811669-2812293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 1 669-281 2293 bp Feature: domain Description: GIIM Note: maturase Location: 2812332-2812551 bp Feature: domain Description: GIIM Note: maturase Location: 281 2332-281 2551 bp Feature: gene Location: 2813451-2814005 bp Feature: domain Description: N6_acetyl_AAC6 Location: 2813454-2814003 bp Feature: domain Description: N6_acetyl_AAC6 Location: 281 3454-281 4003 bp Feature: gene Location: 2813998-2814423 bp Feature: gene Location: 3438541-3438912 bp Feature: domain Description: PRK10276 Location: 3438586-3438748 bp Feature: domain Description: PRK1 0276 Location: 3438586-3438748 bp Feature: gene Location: 3438869-3439108 bp Feature: gene Location: 3439185-3440669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3439587-3440277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3439587-3440277 bp Feature: gene Location: 3442450-3443193 bp Feature: gene Location: 3443208-3444968 bp Feature: domain Description: SGNH_hydrolase_like_2 Location: 3444546-3444954 bp Feature: domain Description: SGNH_hydrolase_like_2 Location: 3444546-3444954 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Lipase_GDSL_2 (pfam13472), PinE (COG1961), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), RVT-UG11, PRK09951 (hypothetical protein; Provisional), PRK15110 (peptide ABC transporter permease SapB), PRK15417 (integron integrase), Arr-ms (pfam12120)
GIIM (pfam08388), N6_acetyl_AAC6 (TIGR04431), SGNH_hydrolase_like_2 (cd01834)

Seq: LN824134.1 Klebsiella pneumoniae genome assembly MS6671.v1, plasmid : _Plasmid_A_Kpneumoniae_MS6671 (279305 bp)
Overview 1 RT 1: 41400-45148 bp 2 RT 2: 144729-148568 bp 3 RT 3: 191140-195233 bp 4 RT 4: 233855-237975 bp Neighborhood of RT #1 [41400, 45153] InsE PHA02517 RVT-GII GIIM PHA02517 IS5 Neighborhood of RT #2 [144729, 148588] INT_Cre_C RVT-GII HHA Neighborhood of RT #3 [191140, 195298] COG3547 RVT-GII GIIM PHA02517 Neighborhood of RT #4 [233855, 237975] HTH_28 rve RVT-GII Feature: gene Location: 41400-41705 bp Feature: domain Description: InsE Location: 41409-41679 bp Feature: domain Description: InsE Location: 41409-41679 bp Feature: gene Location: 41783-42103 bp Feature: domain Description: PHA02517 Location: 41816-42086 bp Feature: domain Description: PHA02 517 Location: 41816-42 086 bp Feature: gene Location: 42746-44266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43019-43748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43019-43748 bp Feature: domain Description: GIIM Note: maturase Location: 43820-44021 bp Feature: domain Description: GIIM Note: maturase Location: 4382 0-4402 1 bp Feature: gene Location: 44395-44814 bp Feature: domain Description: PHA02517 Location: 44398-44809 bp Feature: domain Description: PHA02 517 Location: 44398-44809 bp Feature: gene Location: 44833-45153 bp Feature: domain Description: IS5 Location: 44848-45148 bp Feature: domain Description: IS5 Location: 44848-45148 bp Feature: gene Location: 144729-145046 bp Feature: gene Location: 145112-146248 bp Feature: domain Description: INT_Cre_C Location: 145535-146189 bp Feature: domain Description: INT_Cre_C Location: 145535-146189 bp Feature: gene Location: 146334-147821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146739-147429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146739-14742 9 bp Feature: gene Location: 147827-147994 bp Feature: gene Location: 148337-148588 bp Feature: domain Description: HHA Location: 148385-148568 bp Feature: domain Description: HHA Location: 148385-148568 bp Feature: gene Location: 191140-192216 bp Feature: domain Description: COG3547 Location: 191179-192100 bp Feature: domain Description: COG3547 Location: 191179-192 100 bp Feature: gene Location: 192465-192671 bp Feature: gene Location: 192758-194281 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193031-193763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193031-193763 bp Feature: domain Description: GIIM Note: maturase Location: 193838-194036 bp Feature: domain Description: GIIM Note: maturase Location: 193838-194036 bp Feature: gene Location: 194235-194660 bp Feature: gene Location: 194873-195298 bp Feature: domain Description: PHA02517 Location: 194897-195233 bp Feature: domain Description: PHA02 517 Location: 194897-1952 33 bp Feature: gene Location: 233855-235258 bp Feature: domain Description: HTH_28 Location: 233903-234044 bp Feature: domain Description: HTH_2 8 Location: 2 33903-2 34044 bp Feature: domain Description: rve Location: 234284-234650 bp Feature: domain Description: rve Location: 2 342 84-2 34650 bp Feature: gene Location: 235378-235749 bp Feature: gene Location: 235774-237261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 236179-236869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 36179-2 36869 bp Feature: gene Location: 237374-237688 bp Feature: gene Location: 237697-237975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), IS5 (COG3039), INT_Cre_C (cd00799), HHA (pfam05321), COG3547 (Transposase ), HTH_28 (pfam13518), rve (pfam00665)

Seq: LN824135.1 Klebsiella pneumoniae genome assembly MS6671.v1, plasmid : _Plasmid_B_Kpneumoniae_MS6671 (118323 bp)
Overview 1 RT 1: 79343-84224 bp Neighborhood of RT #1 [79343, 84349] PRK15417 DHFR RVT-GII GIIM MobC Rve Feature: gene Location: 79343-80356 bp Feature: domain Description: PRK15417 Location: 79346-80354 bp Feature: domain Description: PRK15417 Location: 793 46-803 54 bp Feature: gene Location: 80512-80985 bp Feature: domain Description: DHFR Location: 80521-80977 bp Feature: domain Description: DHFR Location: 80521-80977 bp Feature: gene Location: 81054-82409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81348-81972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813 48-81972 bp Feature: domain Description: GIIM Note: maturase Location: 82011-82230 bp Feature: domain Description: GIIM Note: maturase Location: 82011-8223 0 bp Feature: gene Location: 83176-83442 bp Feature: domain Description: MobC Location: 83227-83347 bp Feature: domain Description: MobC Location: 83 227-83 3 47 bp Feature: gene Location: 83555-84349 bp Feature: domain Description: Rve Location: 83606-84224 bp Feature: domain Description: Rve Location: 83 606-84224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15417 (integron integrase), DHFR (cl17279), RVT-GII, GIIM (pfam08388), MobC (pfam05713), Rve (COG3316)

Seq: LN824138.1 Klebsiella pneumoniae genome assembly MS6671.v1, plasmid : _Plasmid_E_Kpneumoniae_MS6671 (84940 bp)
Overview 1 RT 1: 4434-9152 bp 2 RT 2: 71226-75424 bp Neighborhood of RT #1 [4434, 9152] DHFR_1 PRK13746 RVT-GII GIIM N6_acetyl_AAC6 Neighborhood of RT #2 [71226, 75426] RVT_N RVT-GII GIIM HNHc DUF1380 Antirestrict Feature: gene Location: 4434-4931 bp Feature: domain Description: DHFR_1 Location: 4458-4905 bp Feature: domain Description: DHFR_1 Location: 4 4 58-4 905 bp Feature: gene Location: 5339-6130 bp Feature: domain Description: PRK13746 Location: 5342-6122 bp Feature: domain Description: PRK1374 6 Location: 534 2-6122 bp Feature: gene Location: 6206-7561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6500-7124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6500-7124 bp Feature: domain Description: GIIM Note: maturase Location: 7163-7382 bp Feature: domain Description: GIIM Note: maturase Location: 7163-7382 bp Feature: gene Location: 8180-8734 bp Feature: domain Description: N6_acetyl_AAC6 Location: 8183-8732 bp Feature: domain Description: N6_acetyl_AAC6 Location: 8183-8732 bp Feature: gene Location: 8724-9152 bp Feature: gene Location: 71226-71483 bp Feature: gene Location: 71514-71789 bp Feature: gene Location: 72363-74030 bp Feature: domain Description: RVT_N Location: 72411-72648 bp Feature: domain Description: RVT_N Location: 724 11-7264 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72699-73341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72699-7334 1 bp Feature: domain Description: GIIM Note: maturase Location: 73392-73626 bp Feature: domain Description: GIIM Note: maturase Location: 73392-73626 bp Feature: domain Description: HNHc Note: nucleases Location: 73836-73995 bp Feature: domain Description: HNHc Note: nucleases Location: 73836-73995 bp Feature: gene Location: 74532-74954 bp Feature: domain Description: DUF1380 Location: 74535-74832 bp Feature: domain Description: DUF1380 Location: 74 535-74 832 bp Feature: gene Location: 75001-75426 bp Feature: domain Description: Antirestrict Location: 75136-75424 bp Feature: domain Description: Antirestrict Location: 75136-754 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHFR_1 (pfam00186), PRK13746 (aminoglycoside resistance protein; Provisional), RVT-GII, GIIM (pfam08388), N6_acetyl_AAC6 (TIGR04431), RVT_N (pfam13655), HNHc (smart00507), DUF1380 (pfam07128), Antirestrict (pfam03230)