myRT

myRT report for GCA_001456065.2_ASM145606v2

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Seq: CP013489.1 Clostridium butyricum strain KNU-L09 chromosome 2, complete sequence (803000 bp)
Overview 1 RT 1: 554932-563540 bp Neighborhood of RT #1 [554932, 563551] RVT-Retrons ADA MarR Feature: gene Location: 554932-557868 bp Feature: gene Location: 557868-559676 bp Feature: gene Location: 559673-561181 bp Ori: ALR90611.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 560309-560957 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 560309-560957 bp Feature: gene Location: 561769-562761 bp Ori: ALR90612.1 Feature: domain Description: ADA Location: 561784-562753 bp Feature: domain Description: ADA Location: 561 784-562753 bp Feature: gene Location: 563120-563551 bp Ori: ALR90613.1 Feature: domain Description: MarR Location: 563165-563540 bp Feature: domain Description: MarR Location: 5631 65-563540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ADA (cd01320), MarR (pfam01047)

Seq: CP013252.1 Clostridium butyricum strain KNU-L09 chromosome 1, complete sequence (3824894 bp)
Overview 1 RT 1: 2360281-2368920 bp 2 RT 2: 3461723-3468223 bp 3 RT 3: 3668733-3674050 bp Neighborhood of RT #1 [2360281, 2368922] YjiC PadR RVT-UG24 YdiU Neighborhood of RT #2 [3461723, 3468234] GT4_WlbH-like GalU RVT-GII HNHc GalU BaeS Neighborhood of RT #3 [3668733, 3674175] YveK GalU RVT-GII HNHc GalU DUF820 Feature: gene Location: 2360281-2361507 bp Ori: ALP90567.1 Feature: domain Description: YjiC Location: 2360320-2361496 bp Feature: domain Description: YjiC Location: 2 36032 0-2 361496 bp Feature: gene Location: 2361771-2362298 bp Ori: ALP90568.1 Feature: domain Description: PadR Location: 2361783-2362155 bp Feature: domain Description: PadR Location: 2 361783-2 362 155 bp Feature: gene Location: 2363015-2366275 bp Ori: ALP90569.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 2363522-2364002 bp Feature: RT Description: RVT-UG2 4 Note: UG2 4 RT Location: 2 36352 2 -2 364002 bp Feature: gene Location: 2366265-2366837 bp Feature: gene Location: 2367447-2368922 bp Ori: ALP90571.1 Feature: domain Description: YdiU Location: 2367477-2368920 bp Feature: domain Description: YdiU Location: 2 367477-2 36892 0 bp Feature: gene Location: 3461723-3462805 bp Ori: ALP91527.1 Feature: domain Description: GT4_WlbH-like Location: 3461756-3462791 bp Feature: domain Description: GT4_WlbH-like Location: 3461756-3462 791 bp Feature: gene Location: 3463181-3463864 bp Feature: domain Description: GalU Location: 3463187-3463829 bp Feature: domain Description: GalU Location: 3463187-346382 9 bp Feature: gene Location: 3463982-3465793 bp Ori: ALP91528.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3464300-3464996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3464300-3464996 bp Feature: domain Description: HNHc Note: nucleases Location: 3465545-3465683 bp Feature: domain Description: HNHc Note: nucleases Location: 3465545-3465683 bp Feature: gene Location: 3466513-3466731 bp Ori: ALP91529.1 Feature: domain Description: GalU Location: 3466516-3466717 bp Feature: domain Description: GalU Location: 3466516-3466717 bp Feature: gene Location: 3466984-3468234 bp Ori: ALP91530.1 Feature: domain Description: BaeS Location: 3467344-3468223 bp Feature: domain Description: BaeS Location: 3467344-34682 2 3 bp Feature: gene Location: 3668733-3669419 bp Ori: ALP91664.1 Feature: domain Description: YveK Location: 3668742-3669402 bp Feature: domain Description: YveK Location: 3668742 -3669402 bp Feature: gene Location: 3669875-3670552 bp Feature: domain Description: GalU Location: 3669881-3670529 bp Feature: domain Description: GalU Location: 3669881-367052 9 bp Feature: gene Location: 3670670-3672481 bp Ori: ALP91665.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3670988-3671684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3670988-3671684 bp Feature: domain Description: HNHc Note: nucleases Location: 3672233-3672371 bp Feature: domain Description: HNHc Note: nucleases Location: 3672 2 33-3672 371 bp Feature: gene Location: 3673201-3673428 bp Ori: ALP91666.1 Feature: domain Description: GalU Location: 3673213-3673414 bp Feature: domain Description: GalU Location: 36732 13-3673414 bp Feature: gene Location: 3673609-3674175 bp Ori: ALP91667.1 Feature: domain Description: DUF820 Location: 3673642-3674050 bp Feature: domain Description: DUF82 0 Location: 3673642 -3674050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjiC (COG1819), PadR (pfam03551), RVT-UG24, YdiU (COG0397), GT4_WlbH-like (cd03798), GalU (COG1210), RVT-GII, HNHc (smart00507), BaeS (COG0642), YveK (COG3944)
DUF820