myRT

myRT report for GCA_001456135.1_ASM145613v1

Download annotations/find similar RTs

Seq: CP013323.1 Klebsiella pneumoniae strain CAV1193 plasmid pCAV1193-258, complete sequence (257944 bp)
Overview 1 RT 1: 37066-43157 bp 2 RT 2: 49817-55160 bp Neighborhood of RT #1 [37066, 43249] InsE RVT-GII GIIM COG3547 Phage_integrase Neighborhood of RT #2 [49817, 55297] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Feature: gene Location: 37066-37368 bp Ori: ALR28464.1 Feature: domain Description: InsE Location: 37075-37357 bp Feature: domain Description: InsE Location: 37075-37357 bp Feature: gene Location: 37488-37781 bp Feature: gene Location: 38427-39935 bp Ori: ALR28687.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38685-39417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38685-3941 7 bp Feature: domain Description: GIIM Note: maturase Location: 39492-39690 bp Feature: domain Description: GIIM Note: maturase Location: 39492-39690 bp Feature: gene Location: 40477-41553 bp Ori: ALR28466.1 Feature: domain Description: COG3547 Location: 40516-41437 bp Feature: domain Description: COG3547 Location: 4051 6-41 437 bp Feature: gene Location: 42509-43249 bp Ori: ALR28467.1 Feature: domain Description: Phage_integrase Location: 42641-43157 bp Feature: domain Description: Phage_integrase Location: 42641 -431 57 bp Feature: gene Location: 49817-51088 bp Ori: ALR28473.1 Feature: domain Description: umuC Location: 49820-51083 bp Feature: domain Description: umuC Location: 49820-51 083 bp Feature: gene Location: 51088-51513 bp Ori: ALR28474.1 Feature: domain Description: PRK10276 Location: 51091-51499 bp Feature: domain Description: PRK1 0276 Location: 51 091 -51 499 bp Feature: gene Location: 51919-53403 bp Ori: ALR28475.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52321-53011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52321 -5301 1 bp Feature: gene Location: 53652-54623 bp Ori: ALR28476.1 Feature: domain Description: StbA Location: 53655-54600 bp Feature: domain Description: StbA Location: 53655-54600 bp Feature: gene Location: 54626-55297 bp Ori: ALR28477.1 Feature: domain Description: Plasmid_stab_B Location: 54641-54848 bp Feature: domain Description: Plasmid_stab_B Location: 54641 -54848 bp Feature: domain Description: Plasmid_stab_B Location: 54953-55160 bp Feature: domain Description: Plasmid_stab_B Location: 54953-551 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), Phage_integrase (pfam00589), umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: CP013322.1 Klebsiella pneumoniae strain CAV1193, complete genome (5319154 bp)
Overview 1 RT 1: 107107-112470 bp 2 RT 2: 207651-212171 bp 3 RT 3: 328214-333252 bp 4 RT 4: 1616063-1621101 bp 5 RT 5: 2895476-2901734 bp 6 RT 6: 4043292-4052081 bp Neighborhood of RT #1 [107107, 112526] umuC PRK10276 RVT-GII DinI GT9_LPS_heptosyltransferase Neighborhood of RT #2 [207651, 212173] PRK10598 PRK05451 RVT-GII PRK10597 bssS Neighborhood of RT #3 [328214, 333296] Psu RVT-GII DUF4868 Neighborhood of RT #4 [1616063, 1621145] Psu RVT-GII DUF4868 Neighborhood of RT #5 [2895476, 2901742] DUF5405 Phage_GPA RVT-GII DinI Dcm Neighborhood of RT #6 [4043292, 4052095] PRK00007 SbcB RVT-GII PRK10016 YccC Feature: gene Location: 107107-108372 bp Ori: ALR23402.1 Feature: domain Description: umuC Location: 107110-108370 bp Feature: domain Description: umuC Location: 107110-108370 bp Feature: gene Location: 108375-108794 bp Ori: ALR23403.1 Feature: domain Description: PRK10276 Location: 108378-108789 bp Feature: domain Description: PRK102 76 Location: 108378-108789 bp Feature: gene Location: 108873-110357 bp Ori: ALR23404.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109275-109965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1092 75-109965 bp Feature: gene Location: 110974-111216 bp Ori: ALR23405.1 Feature: domain Description: DinI Location: 111025-111205 bp Feature: domain Description: DinI Location: 11102 5-1112 05 bp Feature: gene Location: 111387-112526 bp Ori: ALR23406.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 111570-112470 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 111570-112 470 bp Feature: gene Location: 207651-208211 bp Ori: ALR23506.1 Feature: domain Description: PRK10598 Location: 207654-208209 bp Feature: domain Description: PRK10598 Location: 2 07654-2 082 09 bp Feature: gene Location: 208337-209383 bp Ori: ALR23507.1 Feature: domain Description: PRK05451 Location: 208352-209378 bp Feature: domain Description: PRK05451 Location: 2 08352 -2 09378 bp Feature: gene Location: 209476-210960 bp Ori: ALR23508.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209878-210568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 09878-2 10568 bp Feature: gene Location: 211365-211616 bp Ori: ALR23509.1 Feature: domain Description: PRK10597 Location: 211368-211605 bp Feature: domain Description: PRK10597 Location: 2 11368-2 11605 bp Feature: gene Location: 211919-212173 bp Ori: ALR23510.1 Gene: bssS Feature: domain Description: bssS Location: 211922-212171 bp Feature: domain Description: bssS Location: 2 1192 2 -2 12 171 bp Feature: gene Location: 328214-328780 bp Ori: ALR23621.1 Feature: domain Description: Psu Location: 328232-328772 bp Feature: domain Description: Psu Location: 32 82 32 -32 8772 bp Feature: gene Location: 329441-329752 bp Feature: gene Location: 329985-331469 bp Ori: ALR23623.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330387-331077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330387-331077 bp Feature: gene Location: 331879-332394 bp Feature: gene Location: 332403-333296 bp Ori: ALR23625.1 Feature: domain Description: DUF4868 Location: 332805-333252 bp Feature: domain Description: DUF4868 Location: 332 805-3332 52 bp Feature: gene Location: 1616063-1616629 bp Ori: ALR24778.1 Feature: domain Description: Psu Location: 1616081-1616621 bp Feature: domain Description: Psu Location: 1616081-161662 1 bp Feature: gene Location: 1617290-1617601 bp Feature: gene Location: 1617834-1619318 bp Ori: ALR24780.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1618236-1618926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16182 36-161892 6 bp Feature: gene Location: 1619728-1620243 bp Feature: gene Location: 1620252-1621145 bp Ori: ALR24782.1 Feature: domain Description: DUF4868 Location: 1620654-1621101 bp Feature: domain Description: DUF4868 Location: 162 0654-162 1101 bp Feature: gene Location: 2895476-2895757 bp Ori: ALR25947.1 Feature: domain Description: DUF5405 Location: 2895500-2895737 bp Feature: domain Description: DUF5405 Location: 2 895500-2 895737 bp Feature: gene Location: 2895750-2897981 bp Ori: ALR25948.1 Feature: domain Description: Phage_GPA Location: 2896176-2897118 bp Feature: domain Description: Phage_GPA Location: 2 896176-2 897118 bp Feature: gene Location: 2898439-2899923 bp Ori: ALR25949.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2898841-2899531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 898841-2 899531 bp Feature: gene Location: 2900001-2900441 bp Ori: ALR25950.1 Feature: domain Description: DinI Location: 2900256-2900439 bp Feature: domain Description: DinI Location: 2 9002 56-2 900439 bp Feature: gene Location: 2900714-2901742 bp Ori: ALR25951.1 Feature: domain Description: Dcm Location: 2900717-2901734 bp Feature: domain Description: Dcm Location: 2 900717-2 901734 bp Feature: gene Location: 4043292-4045394 bp Ori: ALR26995.1 Gene: fusA Feature: domain Description: PRK00007 Location: 4043295-4045386 bp Feature: domain Description: PRK00007 Location: 40432 95-4045386 bp Feature: gene Location: 4045612-4047036 bp Ori: ALR26996.1 Gene: sbcB Feature: domain Description: SbcB Location: 4045618-4047034 bp Feature: domain Description: SbcB Location: 4045618-4047034 bp Feature: gene Location: 4048899-4050383 bp Ori: ALR26997.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4049301-4049991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4049301-4049991 bp Feature: gene Location: 4050465-4050938 bp Ori: ALR26998.1 Feature: domain Description: PRK10016 Location: 4050468-4050927 bp Feature: domain Description: PRK10016 Location: 4050468-405092 7 bp Feature: gene Location: 4051037-4052095 bp Ori: ALR26999.1 Feature: domain Description: YccC Location: 4051043-4052081 bp Feature: domain Description: YccC Location: 4051043-4052 081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, DinI (pfam06183), GT9_LPS_heptosyltransferase (cd03789), PRK10598 (lipoprotein; Provisional), PRK05451 (dihydroorotase; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional), bssS (PRK12301), Psu (pfam07455)
DUF4868 (pfam16162), DUF5405 (pfam17399), Phage_GPA (pfam05840), Dcm (COG0270), PRK00007 (elongation factor G; Reviewed), SbcB (COG2925), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289)