myRT

myRT report for GCA_001465175.1_ASM146517v1

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Seq: CP013353.1 Clostridium butyricum strain JKY6D1 chromosome 2, complete sequence (790373 bp)
Overview 1 RT 1: 327548-336156 bp Neighborhood of RT #1 [327548, 336167] RVT-Retrons ADA MarR Feature: gene Location: 327548-330484 bp Feature: gene Location: 330484-332292 bp Feature: gene Location: 332289-333797 bp Ori: ALS18850.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 332925-333573 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 332925-333573 bp Feature: gene Location: 334385-335377 bp Ori: ALS18851.1 Feature: domain Description: ADA Location: 334400-335369 bp Feature: domain Description: ADA Location: 334400-335369 bp Feature: gene Location: 335736-336167 bp Ori: ALS18852.1 Feature: domain Description: MarR Location: 335781-336156 bp Feature: domain Description: MarR Location: 335781 -3361 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, ADA (cd01320), MarR (pfam01047)

Seq: CP013352.1 Clostridium butyricum strain JKY6D1 chromosome 1, complete sequence (3819894 bp)
Overview 1 RT 1: 2079983-2088622 bp 2 RT 2: 3170156-3176656 bp 3 RT 3: 3379041-3383828 bp Neighborhood of RT #1 [2079983, 2088624] YjiC PadR RVT-UG24 YdiU Neighborhood of RT #2 [3170156, 3176667] GT4_WlbH-like GalU RVT-GII HNHc GalU BaeS Neighborhood of RT #3 [3379041, 3383959] YveK GalU RVT-GII GalU DUF820 Feature: gene Location: 2079983-2081209 bp Ori: ALS17070.1 Feature: domain Description: YjiC Location: 2080022-2081198 bp Feature: domain Description: YjiC Location: 2 08002 2 -2 081198 bp Feature: gene Location: 2081473-2082000 bp Ori: ALS17071.1 Feature: domain Description: PadR Location: 2081485-2081857 bp Feature: domain Description: PadR Location: 2 081485-2 081857 bp Feature: gene Location: 2082717-2085977 bp Ori: ALS17072.1 Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 2083224-2083704 bp Feature: RT Description: RVT-UG2 4 Note: UG2 4 RT Location: 2 0832 2 4-2 083704 bp Feature: gene Location: 2085967-2086539 bp Feature: gene Location: 2087149-2088624 bp Ori: ALS17074.1 Feature: domain Description: YdiU Location: 2087179-2088622 bp Feature: domain Description: YdiU Location: 2 087179-2 08862 2 bp Feature: gene Location: 3170156-3171238 bp Ori: ALS18023.1 Feature: domain Description: GT4_WlbH-like Location: 3170189-3171224 bp Feature: domain Description: GT4_WlbH-like Location: 3170189-31712 2 4 bp Feature: gene Location: 3171614-3172297 bp Feature: domain Description: GalU Location: 3171620-3172262 bp Feature: domain Description: GalU Location: 317162 0-3172 2 62 bp Feature: gene Location: 3172415-3174226 bp Ori: ALS18024.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3172733-3173429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3172 733-317342 9 bp Feature: domain Description: HNHc Note: nucleases Location: 3173978-3174116 bp Feature: domain Description: HNHc Note: nucleases Location: 3173978-3174116 bp Feature: gene Location: 3174946-3175164 bp Ori: ALS18025.1 Feature: domain Description: GalU Location: 3174949-3175150 bp Feature: domain Description: GalU Location: 3174949-3175150 bp Feature: gene Location: 3175417-3176667 bp Ori: ALS18026.1 Feature: domain Description: BaeS Location: 3175777-3176656 bp Feature: domain Description: BaeS Location: 3175777-3176656 bp Feature: gene Location: 3379041-3379727 bp Ori: ALS18161.1 Feature: domain Description: YveK Location: 3379050-3379710 bp Feature: domain Description: YveK Location: 3379050-3379710 bp Feature: gene Location: 3380171-3380896 bp Feature: domain Description: GalU Location: 3380222-3380873 bp Feature: domain Description: GalU Location: 33802 2 2 -3380873 bp Feature: gene Location: 3380959-3382269 bp Ori: ALS18162.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3381277-3381973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33812 77-3381973 bp Feature: gene Location: 3382986-3383213 bp Ori: ALS18163.1 Feature: domain Description: GalU Location: 3382998-3383199 bp Feature: domain Description: GalU Location: 3382 998-3383199 bp Feature: gene Location: 3383393-3383959 bp Ori: ALS18164.1 Feature: domain Description: DUF820 Location: 3383426-3383828 bp Feature: domain Description: DUF82 0 Location: 338342 6-338382 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjiC (COG1819), PadR (pfam03551), RVT-UG24, YdiU (COG0397), GT4_WlbH-like (cd03798), GalU (COG1210), RVT-GII, HNHc (smart00507), BaeS (COG0642), YveK (COG3944)
DUF820