myRT

myRT report for GCA_001465275.1_ASM146527v1

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Seq: CP013653.1 Paenibacillus sp. 32O-W, complete genome (5375858 bp)
Overview 1 RT 1: 1685885-1691364 bp 2 RT 2: 1962065-1966905 bp 3 RT 3: 3111699-3116994 bp 4 RT 4: 4022663-4030771 bp 5 RT 5: 4914237-4919506 bp Neighborhood of RT #1 [1685885, 1691441] TTHA1429-like_MBL-fold RVT-GII GIIM PgpA Germane Germane Neighborhood of RT #2 [1962065, 1967360] COG4185 RVT-Retrons PRK05803 Ser_Recombinase Recombinase Zn_ribbon_recom Neighborhood of RT #3 [3111699, 3117086] COG4587 COG3694 RVT-GII GIIM ZnuB ZnuB Neighborhood of RT #4 [4022663, 4030776] HK_WalK HK_WalK OmpR RVT-GII GIIM PBP2_AlgQ_like_3 DUF3502 UgpE Neighborhood of RT #5 [4914237, 4919517] HxlR Spr RVT-GII GIIM FrmB PRK05427 Feature: gene Location: 1685885-1686904 bp Ori: ALS26918.1 Feature: domain Description: TTHA1429-like_MBL-fold Location: 1685942-1686656 bp Feature: domain Description: TTHA1 429-like_MBL-fold Location: 1 685942-1 686656 bp Feature: gene Location: 1686963-1687655 bp Feature: gene Location: 1688174-1689583 bp Ori: ALS26920.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1688516-1689131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 68851 6-1 6891 31 bp Feature: domain Description: GIIM Note: maturase Location: 1689185-1689398 bp Feature: domain Description: GIIM Note: maturase Location: 1 6891 85-1 689398 bp Feature: gene Location: 1689678-1690205 bp Ori: ALS26921.1 Feature: domain Description: PgpA Location: 1689723-1690170 bp Feature: domain Description: PgpA Location: 1 689723-1 6901 70 bp Feature: gene Location: 1690347-1691441 bp Ori: ALS26922.1 Feature: domain Description: Germane Location: 1690584-1690926 bp Feature: domain Description: Germane Location: 1 690584-1 690926 bp Feature: domain Description: Germane Location: 1691037-1691364 bp Feature: domain Description: Germane Location: 1 691 037-1 691 364 bp Feature: gene Location: 1962065-1962244 bp Feature: gene Location: 1962237-1962821 bp Ori: ALS27148.1 Feature: domain Description: COG4185 Location: 1962258-1962798 bp Feature: domain Description: COG41 85 Location: 1 962258-1 962798 bp Feature: gene Location: 1963002-1963955 bp Ori: ALS27149.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1963155-1963704 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 9631 55-1 963704 bp Feature: gene Location: 1965358-1965801 bp Ori: ALS27150.1 Feature: domain Description: PRK05803 Location: 1965370-1965790 bp Feature: domain Description: PRK05803 Location: 1 965370-1 965790 bp Feature: gene Location: 1965822-1967360 bp Ori: ALS27151.1 Feature: domain Description: Ser_Recombinase Location: 1965828-1966251 bp Feature: domain Description: Ser_Recombinase Location: 1 965828-1 966251 bp Feature: domain Description: Recombinase Location: 1966353-1966698 bp Feature: domain Description: Recombinase Location: 1 966353-1 966698 bp Feature: domain Description: Zn_ribbon_recom Location: 1966755-1966905 bp Feature: domain Description: Zn_ribbon_recom Location: 1 966755-1 966905 bp Feature: gene Location: 3111699-3112502 bp Ori: ALS28207.1 Feature: domain Description: COG4587 Location: 3111702-3112500 bp Feature: domain Description: COG4587 Location: 31 1 1 702-31 1 2500 bp Feature: gene Location: 3112507-3113289 bp Ori: ALS28208.1 Feature: domain Description: COG3694 Location: 3112513-3113287 bp Feature: domain Description: COG3694 Location: 31 1 251 3-31 1 3287 bp Feature: gene Location: 3113352-3114761 bp Ori: ALS28209.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3113694-3114309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 3694-31 1 4309 bp Feature: domain Description: GIIM Note: maturase Location: 3114363-3114576 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 4363-31 1 4576 bp Feature: gene Location: 3115273-3116166 bp Ori: ALS28210.1 Feature: domain Description: ZnuB Location: 3115279-3116113 bp Feature: domain Description: ZnuB Location: 31 1 5279-31 1 61 1 3 bp Feature: gene Location: 3116163-3117086 bp Ori: ALS28211.1 Feature: domain Description: ZnuB Location: 3116190-3116994 bp Feature: domain Description: ZnuB Location: 31 1 61 90-31 1 6994 bp Feature: gene Location: 4022663-4024009 bp Ori: ALS29065.1 Feature: domain Description: HK_WalK Location: 4023140-4023314 bp Feature: domain Description: HK_WalK Location: 40231 40-402331 4 bp Feature: domain Description: HK_WalK Location: 4023317-4023995 bp Feature: domain Description: HK_WalK Location: 402331 7-4023995 bp Feature: gene Location: 4024009-4024725 bp Ori: ALS29066.1 Feature: domain Description: OmpR Location: 4024015-4024702 bp Feature: domain Description: OmpR Location: 402401 5-4024702 bp Feature: gene Location: 4026300-4027709 bp Ori: ALS29067.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4026642-4027257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4026642-4027257 bp Feature: domain Description: GIIM Note: maturase Location: 4027311-4027524 bp Feature: domain Description: GIIM Note: maturase Location: 402731 1 -4027524 bp Feature: gene Location: 4028220-4029707 bp Ori: ALS29068.1 Feature: domain Description: PBP2_AlgQ_like_3 Location: 4028412-4028880 bp Feature: domain Description: PBP2_AlgQ_like_3 Location: 402841 2-4028880 bp Feature: domain Description: DUF3502 Location: 4029315-4029699 bp Feature: domain Description: DUF3502 Location: 402931 5-4029699 bp Feature: gene Location: 4029817-4030776 bp Ori: ALS29069.1 Feature: domain Description: UgpE Location: 4029901-4030771 bp Feature: domain Description: UgpE Location: 4029901 -4030771 bp Feature: gene Location: 4914237-4914569 bp Ori: ALS29821.1 Feature: domain Description: HxlR Location: 4914264-4914564 bp Feature: domain Description: HxlR Location: 491 4264-491 4564 bp Feature: gene Location: 4915086-4915565 bp Ori: ALS29822.1 Feature: domain Description: Spr Location: 4915173-4915554 bp Feature: domain Description: Spr Location: 491 51 73-491 5554 bp Feature: gene Location: 4915659-4917068 bp Ori: ALS29823.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4916001-4916616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 491 6001 -491 661 6 bp Feature: domain Description: GIIM Note: maturase Location: 4916670-4916883 bp Feature: domain Description: GIIM Note: maturase Location: 491 6670-491 6883 bp Feature: gene Location: 4917609-4918391 bp Ori: ALS29824.1 Feature: domain Description: FrmB Location: 4917726-4918380 bp Feature: domain Description: FrmB Location: 491 7726-491 8380 bp Feature: gene Location: 4918582-4919517 bp Ori: ALS29825.1 Feature: domain Description: PRK05427 Location: 4918585-4919506 bp Feature: domain Description: PRK05427 Location: 491 8585-491 9506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TTHA1429-like_MBL-fold (cd07725), RVT-GII, GIIM (pfam08388), PgpA (pfam04608), Germane (smart00909), COG4185 (Predicted ABC-type ATPase ), RVT-Retrons, PRK05803 (RNA polymerase sporulation sigma factor SigK), Ser_Recombinase (cl02788), Recombinase (pfam07508)
Zn_ribbon_recom (pfam13408), COG4587 (ABC-type uncharacterized transport system, permease component ), COG3694 (ABC-type uncharacterized transport system, permease component ), ZnuB (COG1108), HK_WalK (NF033092), OmpR (COG0745), PBP2_AlgQ_like_3 (cd13582), DUF3502 (pfam12010), UgpE (COG0395), HxlR (pfam01638)
Spr (COG0791), FrmB (COG0627), PRK05427 (putative manganese-dependent inorganic pyrophosphatase; Provisional)