myRT

myRT report for GCA_001469735.1_ASM146973v1

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Seq: CP013487.1 Vibrio alginolyticus strain ATCC 33787 plasmid pMBL287, complete sequence (286750 bp)
Overview 1 RT 1: 146033-149726 bp 2 RT 2: 237829-242767 bp Neighborhood of RT #1 [146033, 149842] DUF2913 RVT_N RVT-GII GIIM YifN Neighborhood of RT #2 [237829, 242767] PRK10808 RVT-GII GIIM Feature: gene Location: 146033-146221 bp Feature: gene Location: 146484-146885 bp Feature: domain Description: DUF2913 Location: 146508-146814 bp Feature: domain Description: DUF291 3 Location: 1 46508-1 4681 4 bp Feature: gene Location: 147468-148940 bp Ori: ALR95767.1 Feature: domain Description: RVT_N Location: 147516-147759 bp Feature: domain Description: RVT_N Location: 1 4751 6-1 47759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147804-148431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 47804-1 48431 bp Feature: domain Description: GIIM Note: maturase Location: 148491-148716 bp Feature: domain Description: GIIM Note: maturase Location: 1 48491 -1 4871 6 bp Feature: gene Location: 149019-149234 bp Feature: gene Location: 149315-149842 bp Ori: ALR95641.1 Feature: domain Description: YifN Location: 149333-149726 bp Feature: domain Description: YifN Location: 1 49333-1 49726 bp Feature: gene Location: 237829-238761 bp Ori: ALR95727.1 Feature: domain Description: PRK10808 Location: 238006-238720 bp Feature: domain Description: PRK1 0808 Location: 238006-238720 bp Feature: gene Location: 238963-239262 bp Feature: gene Location: 239527-240861 bp Ori: ALR95729.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239815-240502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23981 5-240502 bp Feature: domain Description: GIIM Note: maturase Location: 240589-240790 bp Feature: domain Description: GIIM Note: maturase Location: 240589-240790 bp Feature: gene Location: 241462-241887 bp Feature: gene Location: 241871-242767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2913 (pfam11140), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YifN (COG3692), PRK10808 (outer membrane protein A; Reviewed)

Seq: CP013484.1 Vibrio alginolyticus strain ATCC 33787 chromosome I, complete sequence (3362673 bp)
Overview 1 RT 1: 3047010-3053124 bp Neighborhood of RT #1 [3047010, 3053267] AE_Prim_S RVT-UG10 AAA_25 INT_C_like_1 Feature: gene Location: 3047010-3047558 bp Feature: gene Location: 3047800-3048519 bp Feature: gene Location: 3048570-3050567 bp Ori: ALR93423.1 Feature: domain Description: AE_Prim_S Location: 3048906-3048951 bp Feature: domain Description: AE_Prim_S Location: 3048906-3048951 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 3049902-3050562 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 3049902 -3050562 bp Feature: gene Location: 3050815-3052068 bp Ori: ALR93424.1 Feature: domain Description: AAA_25 Location: 3051106-3051601 bp Feature: domain Description: AAA_2 5 Location: 3051106-3051601 bp Feature: gene Location: 3052134-3053267 bp Ori: ALR93425.1 Feature: domain Description: INT_C_like_1 Location: 3052626-3053124 bp Feature: domain Description: INT_C_like_1 Location: 3052 62 6-305312 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AE_Prim_S (cd04860), RVT-UG10, AAA_25 (pfam13481), INT_C_like_1 (cd01184)

Seq: CP013485.1 Vibrio alginolyticus strain ATCC 33787 chromosome II, complete sequence (1851538 bp)
Overview 1 RT 1: 1791566-1797971 bp Neighborhood of RT #1 [1791566, 1797994] PRK11139 RVT_N RVT-GII GIIM BCCT HcaE Feature: gene Location: 1791566-1792492 bp Ori: ALR95241.1 Feature: domain Description: PRK11139 Location: 1791578-1792460 bp Feature: domain Description: PRK1113 9 Location: 1791578-1792460 bp Feature: gene Location: 1792585-1792842 bp Feature: gene Location: 1792962-1794434 bp Ori: ALR95368.1 Feature: domain Description: RVT_N Location: 1793010-1793253 bp Feature: domain Description: RVT_N Location: 1793 010-1793 253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1793298-1793925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1793 298-1793 925 bp Feature: domain Description: GIIM Note: maturase Location: 1793985-1794210 bp Feature: domain Description: GIIM Note: maturase Location: 1793 985-1794210 bp Feature: gene Location: 1795018-1796487 bp Feature: domain Description: BCCT Location: 1795063-1796488 bp Feature: domain Description: BCCT Location: 1795063 -1796488 bp Feature: gene Location: 1796807-1797994 bp Ori: ALR95243.1 Feature: domain Description: HcaE Location: 1796888-1797971 bp Feature: domain Description: HcaE Location: 1796888-1797971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11139 (DNA-binding transcriptional activator GcvA; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), BCCT (pfam02028), HcaE (COG4638)