myRT

myRT report for GCA_001469815.1_ASM146981v1

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Seq: CP013657.1 Escherichia coli strain uk_P46212 plasmid, complete sequence (143748 bp)
Overview 1 RT 1: 62730-66621 bp Neighborhood of RT #1 [62730, 66626] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 62730-62921 bp Feature: gene Location: 63004-63123 bp Feature: gene Location: 63801-65702 bp Ori: ALT48506.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64068-64899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64068-64899 bp Feature: domain Description: Intron_maturas2 Location: 65013-65271 bp Feature: domain Description: Intron_maturas2 Location: 6501 3-65271 bp Feature: domain Description: HNHc Note: nucleases Location: 65445-65607 bp Feature: domain Description: HNHc Note: nucleases Location: 65445-65607 bp Feature: gene Location: 65852-66337 bp Ori: ALT48507.1 Feature: domain Description: PRK13732 Location: 65855-66335 bp Feature: domain Description: PRK1 3732 Location: 65855-66335 bp Feature: gene Location: 66393-66626 bp Ori: ALT48508.1 Feature: domain Description: DUF905 Location: 66423-66621 bp Feature: domain Description: DUF905 Location: 66423-66621 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: CP013658.1 Escherichia coli strain uk_P46212, complete sequence (5106662 bp)
Overview 1 RT 1: 391263-398117 bp 2 RT 2: 3202784-3206001 bp Neighborhood of RT #1 [391263, 398117] PRK11388 RVT-Retrons Neighborhood of RT #2 [3202784, 3206001] zinc_ribbon_11 PHA02517 RVT-GII GIIM Feature: gene Location: 391263-393182 bp Ori: ALT49011.1 Feature: domain Description: PRK11388 Location: 391266-393174 bp Feature: domain Description: PRK11388 Location: 3912 66-393174 bp Feature: gene Location: 393219-393449 bp Feature: gene Location: 394474-396231 bp Ori: ALT49013.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 394618-395236 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 394618-3952 36 bp Feature: gene Location: 396478-397605 bp Feature: gene Location: 397602-398117 bp Feature: gene Location: 3202784-3203266 bp Ori: ALT51557.1 Feature: domain Description: zinc_ribbon_11 Location: 3202883-3203201 bp Feature: domain Description: zinc_ribbon_11 Location: 32 02 883-32 032 01 bp Feature: gene Location: 3203250-3203636 bp Ori: ALT53397.1 Feature: domain Description: PHA02517 Location: 3203253-3203634 bp Feature: domain Description: PHA02 517 Location: 32 032 53-32 03634 bp Feature: gene Location: 3203813-3205321 bp Ori: ALT53398.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3204071-3204803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 04071-32 04803 bp Feature: domain Description: GIIM Note: maturase Location: 3204878-3205076 bp Feature: domain Description: GIIM Note: maturase Location: 32 04878-32 05076 bp Feature: gene Location: 3205290-3205715 bp Feature: gene Location: 3205630-3206001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons, zinc_ribbon_11 (pfam11682), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)