myRT

myRT report for GCA_001484065.1_ASM148406v1

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Seq: CP013068.1 Pannonibacter phragmitetus strain 31801, complete genome (5318696 bp)
Overview 1 RT 1: 585413-589069 bp 2 RT 2: 2393449-2398792 bp 3 RT 3: 2862867-2868957 bp 4 RT 4: 3569531-3574723 bp Neighborhood of RT #1 [585413, 589224] PRK14796 Tra5 RVT-GII KOG4768 HTH_32 Neighborhood of RT #2 [2393449, 2398851] MarR PBP2_TRAP_Dctp3_4 RVT-GII KOG4768 HTH_LacI PBP1_FruR Neighborhood of RT #3 [2862867, 2868957] PRK15062 hypE RVT-UG7 Neighborhood of RT #4 [3569531, 3574734] rplM rpsI RVT-Retrons PRK09228 Feature: gene Location: 585413-585886 bp Ori: ALV26123.1 Feature: domain Description: PRK14796 Location: 585419-585866 bp Feature: domain Description: PRK1 4796 Location: 58541 9-585866 bp Feature: gene Location: 585975-586514 bp Feature: domain Description: Tra5 Location: 585987-586437 bp Feature: domain Description: Tra5 Location: 585987-586437 bp Feature: gene Location: 586591-588102 bp Ori: ALV26124.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 586849-587581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 586849-587581 bp Feature: domain Description: KOG4768 Location: 587734-587857 bp Feature: domain Description: KOG4768 Location: 587734-587857 bp Feature: gene Location: 588227-588421 bp Feature: gene Location: 588742-589224 bp Feature: domain Description: HTH_32 Location: 588847-589069 bp Feature: domain Description: HTH_32 Location: 588847-589069 bp Feature: gene Location: 2393449-2393913 bp Ori: ALV27556.1 Feature: domain Description: MarR Location: 2393497-2393854 bp Feature: domain Description: MarR Location: 2393497-2393854 bp Feature: gene Location: 2394120-2394836 bp Ori: ALV27557.1 Feature: domain Description: PBP2_TRAP_Dctp3_4 Location: 2394135-2394780 bp Feature: domain Description: PBP2_TRAP_Dctp3_4 Location: 23941 35-2394780 bp Feature: gene Location: 2394937-2396448 bp Ori: ALV27558.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2395195-2395927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23951 95-2395927 bp Feature: domain Description: KOG4768 Location: 2396080-2396203 bp Feature: domain Description: KOG4768 Location: 2396080-2396203 bp Feature: gene Location: 2396573-2396767 bp Feature: gene Location: 2397793-2398851 bp Ori: ALV27560.1 Feature: domain Description: HTH_LacI Location: 2397841-2397991 bp Feature: domain Description: HTH_LacI Location: 2397841 -2397991 bp Feature: domain Description: PBP1_FruR Location: 2398006-2398792 bp Feature: domain Description: PBP1 _FruR Location: 2398006-2398792 bp Feature: gene Location: 2862867-2864003 bp Ori: ALV27898.1 Feature: domain Description: PRK15062 Location: 2862870-2863986 bp Feature: domain Description: PRK1 5062 Location: 2862870-2863986 bp Feature: gene Location: 2864051-2865073 bp Ori: ALV27899.1 Feature: domain Description: hypE Location: 2864108-2865071 bp Feature: domain Description: hypE Location: 28641 08-2865071 bp Feature: gene Location: 2865839-2867482 bp Ori: ALV27900.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2866244-2866667 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2866244-2866667 bp Feature: gene Location: 2868345-2868545 bp Feature: gene Location: 2868595-2868957 bp Feature: gene Location: 3569531-3569995 bp Ori: ALV28445.1 Feature: domain Description: rplM Location: 3569534-3569963 bp Feature: domain Description: rplM Location: 3569534-3569963 bp Feature: gene Location: 3569998-3570471 bp Ori: ALV28446.1 Feature: domain Description: rpsI Location: 3570094-3570469 bp Feature: domain Description: rpsI Location: 3570094-3570469 bp Feature: gene Location: 3571154-3572140 bp Ori: ALV28447.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3571259-3571841 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3571 259-3571 841 bp Feature: gene Location: 3572142-3572903 bp Feature: gene Location: 3573412-3574734 bp Ori: ALV28449.1 Feature: domain Description: PRK09228 Location: 3573445-3574723 bp Feature: domain Description: PRK09228 Location: 3573445-3574723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14796 (lipoprotein signal peptidase; Provisional), Tra5 (COG2801), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), HTH_32 (pfam13565), MarR (pfam01047), PBP2_TRAP_Dctp3_4 (cd13665), HTH_LacI (cd01392), PBP1_FruR (cd06274), PRK15062 (hydrogenase isoenzymes formation protein HypD; Provisional)
hypE (TIGR02124), RVT-UG7, rplM (PRK09216), rpsI (PRK00132), RVT-Retrons, PRK09228 (guanine deaminase; Provisional)