myRT

myRT report for GCA_001484665.1_ASM148466v1

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Seq: CP011917.1 Burkholderia cenocepacia strain ST32 chromosome 1, complete sequence (3822749 bp)
Overview 1 RT 1: 2800250-2806002 bp 2 RT 2: 2814480-2819905 bp 3 RT 3: 3644434-3653572 bp Neighborhood of RT #1 [2800250, 2806070] COG4315 IS285 RVT-GII GIIM RlpA YcbL-like_MBL-fold Neighborhood of RT #2 [2814480, 2819925] DLH GatA RVT-GII GIIM fadh2 YvlD Neighborhood of RT #3 [3644434, 3653598] DadA RVT-GII GIIM IS285 RsmI Feature: gene Location: 2800250-2800609 bp Ori: ALV58042.1 Feature: domain Description: COG4315 Location: 2800271-2800607 bp Feature: domain Description: COG431 5 Location: 2800271 -2800607 bp Feature: gene Location: 2801041-2802309 bp Ori: ALV57086.1 Feature: domain Description: IS285 Location: 2801125-2802295 bp Feature: domain Description: IS285 Location: 2801 1 25-2802295 bp Feature: gene Location: 2802367-2803701 bp Ori: ALV57087.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2802700-2803315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2802700-280331 5 bp Feature: domain Description: GIIM Note: maturase Location: 2803375-2803576 bp Feature: domain Description: GIIM Note: maturase Location: 2803375-2803576 bp Feature: gene Location: 2804159-2804770 bp Ori: ALV57088.1 Feature: domain Description: RlpA Location: 2804231-2804735 bp Feature: domain Description: RlpA Location: 2804231 -2804735 bp Feature: gene Location: 2805426-2806070 bp Ori: ALV57089.1 Feature: domain Description: YcbL-like_MBL-fold Location: 2805438-2806002 bp Feature: domain Description: YcbL-like_MBL-fold Location: 2805438-2806002 bp Feature: gene Location: 2814480-2815172 bp Ori: ALV57096.1 Feature: domain Description: DLH Location: 2814492-2815170 bp Feature: domain Description: DLH Location: 281 4492-281 51 70 bp Feature: gene Location: 2815253-2816731 bp Ori: ALV58045.1 Feature: domain Description: GatA Location: 2815280-2816708 bp Feature: domain Description: GatA Location: 281 5280-281 6708 bp Feature: gene Location: 2816841-2818238 bp Ori: ALV57097.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2817174-2817792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 71 74-281 7792 bp Feature: domain Description: GIIM Note: maturase Location: 2817843-2818053 bp Feature: domain Description: GIIM Note: maturase Location: 281 7843-281 8053 bp Feature: gene Location: 2818711-2819541 bp Ori: ALV57098.1 Feature: domain Description: fadh2 Location: 2818729-2819533 bp Feature: domain Description: fadh2 Location: 281 8729-281 9533 bp Feature: gene Location: 2819572-2819925 bp Ori: ALV57099.1 Feature: domain Description: YvlD Location: 2819575-2819905 bp Feature: domain Description: YvlD Location: 281 9575-281 9905 bp Feature: gene Location: 3644434-3645678 bp Ori: ALV57768.1 Feature: domain Description: DadA Location: 3644437-3645673 bp Feature: domain Description: DadA Location: 3644437-3645673 bp Feature: gene Location: 3646491-3649328 bp Feature: gene Location: 3649858-3651192 bp Ori: ALV57769.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3650191-3650806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36501 91 -3650806 bp Feature: domain Description: GIIM Note: maturase Location: 3650866-3651067 bp Feature: domain Description: GIIM Note: maturase Location: 3650866-3651 067 bp Feature: gene Location: 3651250-3652518 bp Ori: ALV57770.1 Feature: domain Description: IS285 Location: 3651334-3652504 bp Feature: domain Description: IS285 Location: 3651 334-3652504 bp Feature: gene Location: 3652711-3653598 bp Ori: ALV57771.1 Feature: domain Description: RsmI Location: 3652759-3653572 bp Feature: domain Description: RsmI Location: 3652759-3653572 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), IS285 (COG3328), RVT-GII, GIIM (pfam08388), RlpA (COG0797), YcbL-like_MBL-fold (cd07737), DLH (pfam01738), GatA (COG0154), fadh2 (TIGR00676), YvlD (COG1950)
DadA (COG0665), RsmI (COG0313)

Seq: CP011919.1 Burkholderia cenocepacia strain ST32 chromosome 3, complete sequence (989585 bp)
Overview 1 RT 1: 595655-600986 bp Neighborhood of RT #1 [595655, 601009] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 595655-596410 bp Ori: ALV61169.1 Feature: domain Description: his_ut_repres Location: 595733-596405 bp Feature: domain Description: his_ut_repres Location: 595733-596405 bp Feature: gene Location: 596645-597217 bp Ori: ALV61170.1 Feature: domain Description: FIN Location: 596831-597182 bp Feature: domain Description: FIN Location: 596831-597182 bp Feature: gene Location: 597471-598820 bp Ori: ALV61171.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 597936-598572 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 597936-598572 bp Feature: gene Location: 599146-599475 bp Ori: ALV61172.1 Feature: domain Description: Histone_HNS Location: 599167-599404 bp Feature: domain Description: Histone_HNS Location: 599167-599404 bp Feature: gene Location: 599762-601009 bp Ori: ALV61173.1 Feature: domain Description: MFS_MucK Location: 599852-600986 bp Feature: domain Description: MFS_MucK Location: 599852 -600986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: CP011918.1 Burkholderia cenocepacia strain ST32 chromosome 2, complete sequence (3086109 bp)
Overview 1 RT 1: 1171884-1182161 bp Neighborhood of RT #1 [1171884, 1182196] HATPase_c_3 IS285 RVT-UG5 HTH_29 rve IS285 Feature: gene Location: 1171884-1173839 bp Ori: ALV59064.1 Feature: domain Description: HATPase_c_3 Location: 1171953-1172277 bp Feature: domain Description: HATPase_c_3 Location: 1171953 -1172277 bp Feature: gene Location: 1173775-1175043 bp Ori: ALV59065.1 Feature: domain Description: IS285 Location: 1173859-1175029 bp Feature: domain Description: IS285 Location: 1173 859-1175029 bp Feature: gene Location: 1175343-1178336 bp Ori: ALV60625.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1175814-1176288 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1175814-1176288 bp Feature: gene Location: 1179463-1180500 bp Ori: ALV59066.1 Feature: domain Description: HTH_29 Location: 1179502-1179682 bp Feature: domain Description: HTH_29 Location: 1179502-1179682 bp Feature: domain Description: rve Location: 1179949-1180312 bp Feature: domain Description: rve Location: 1179949-11803 12 bp Feature: gene Location: 1180988-1182196 bp Ori: ALV59067.1 Feature: domain Description: IS285 Location: 1181072-1182161 bp Feature: domain Description: IS285 Location: 1181072-1182161 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), IS285 (COG3328), RVT-UG5, HTH_29 (pfam13551), rve (pfam00665)