myRT

myRT report for GCA_001485455.1_ASM148545v1

Download annotations/find similar RTs

Seq: CP008697.1 Escherichia coli strain ST648, complete genome (5056598 bp)
Overview 1 RT 1: 4064486-4070589 bp 2 RT 2: 4092903-4098294 bp 3 RT 3: 4912952-4916834 bp Neighborhood of RT #1 [4064486, 4070589] Zn_Tnp_IS1 HTH_Tnp_IS1 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [4092903, 4098323] PFLE_PFLC RVT-GII RVT-GII GIIM YesM Neighborhood of RT #3 [4912952, 4916839] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 4064486-4064758 bp Ori: ALV70363.1 Feature: domain Description: Zn_Tnp_IS1 Location: 4064489-4064591 bp Feature: domain Description: Zn_Tnp_IS1 Location: 4064489-4064591 bp Feature: domain Description: HTH_Tnp_IS1 Location: 4064612-4064747 bp Feature: domain Description: HTH_Tnp_IS1 Location: 406461 2-4064747 bp Feature: gene Location: 4066670-4067056 bp Ori: ALV70364.1 Feature: domain Description: PHA02517 Location: 4066673-4067054 bp Feature: domain Description: PHA0251 7 Location: 4066673-4067054 bp Feature: gene Location: 4067233-4068741 bp Ori: ALV70365.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4067491-4068223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4067491 -4068223 bp Feature: domain Description: GIIM Note: maturase Location: 4068298-4068496 bp Feature: domain Description: GIIM Note: maturase Location: 4068298-4068496 bp Feature: gene Location: 4069348-4069560 bp Ori: ALV70366.1 Feature: domain Description: PHA02517 Location: 4069351-4069495 bp Feature: domain Description: PHA0251 7 Location: 4069351 -4069495 bp Feature: gene Location: 4069765-4070589 bp Feature: gene Location: 4092903-4093820 bp Ori: ALV70390.1 Feature: domain Description: PFLE_PFLC Location: 4092939-4093794 bp Feature: domain Description: PFLE_PFLC Location: 4092939-4093794 bp Feature: gene Location: 4093957-4094871 bp Feature: gene Location: 4095357-4095896 bp Ori: ALV70392.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4095687-4095765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4095687-4095765 bp Feature: gene Location: 4095963-4096445 bp Ori: ALV70393.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4095972-4096212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4095972-409621 2 bp Feature: domain Description: GIIM Note: maturase Location: 4096260-4096440 bp Feature: domain Description: GIIM Note: maturase Location: 4096260-4096440 bp Feature: gene Location: 4096544-4096723 bp Feature: gene Location: 4097094-4098323 bp Ori: ALV70395.1 Feature: domain Description: YesM Location: 4097574-4098294 bp Feature: domain Description: YesM Location: 4097574-4098294 bp Feature: gene Location: 4912952-4913410 bp Ori: ALV71127.1 Feature: domain Description: dut Location: 4912958-4913405 bp Feature: domain Description: dut Location: 491 2958-491 3405 bp Feature: gene Location: 4913517-4914113 bp Ori: ALV71128.1 Gene: slmA Feature: domain Description: slmA Location: 4913523-4914099 bp Feature: domain Description: slmA Location: 491 3523-491 4099 bp Feature: gene Location: 4914159-4915118 bp Ori: ALV71129.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4914294-4914843 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 491 4294-491 4843 bp Feature: gene Location: 4915416-4916057 bp Ori: ALV71130.1 Gene: pyrE Feature: domain Description: pyrE Location: 4915419-4916052 bp Feature: domain Description: pyrE Location: 491 541 9-491 6052 bp Feature: gene Location: 4916123-4916839 bp Ori: ALV71131.1 Gene: rph Feature: domain Description: rph Location: 4916126-4916834 bp Feature: domain Description: rph Location: 491 61 26-491 6834 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_Tnp_IS1 (pfam03811), HTH_Tnp_IS1 (pfam12759), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494), YesM (COG2972), dut (TIGR00576), slmA (PRK09480), RVT-Retrons
pyrE (TIGR00336), rph (PRK00173)