myRT

myRT report for GCA_001511755.1_Shine

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Seq: LN854573.1 Pseudomonas sp. URMO17WK12:I11 genome assembly Shine, chromosome : 1 (6374437 bp)
Overview 1 RT 1: 588424-594090 bp 2 RT 2: 713582-717884 bp 3 RT 3: 1668587-1675312 bp 4 RT 4: 2015403-2021675 bp 5 RT 5: 2095473-2102925 bp 6 RT 6: 3437640-3443812 bp 7 RT 7: 4079130-4086060 bp 8 RT 8: 4325571-4333420 bp 9 RT 9: 5119548-5126348 bp 10 RT 10: 5551604-5558405 bp Neighborhood of RT #1 [588424, 594326] LysR RVT-GII GIIM YcaC_related YtcJ Neighborhood of RT #2 [713582, 717910] DUF2214 beta_CA_cladeC RVT-GII GIIM RDD Neighborhood of RT #3 [1668587, 1675314] OafA DDE_Tnp_ISL3 RVT-GII GIIM PRK05657 nlpD nlpD Neighborhood of RT #4 [2015403, 2021692] dppF RVT-GII GIIM prfC OpuBB Neighborhood of RT #5 [2095473, 2102925] RVT-Retrons HHH_3 Neighborhood of RT #6 [3437640, 3443901] CybB PRK03757 RVT-GII GIIM PRK10590 PBP2_HisK Neighborhood of RT #7 [4079130, 4086062] PRK12284 AFG1_ATPase RVT-GII GIIM GlxA LCAD Neighborhood of RT #8 [4325571, 4333470] Methyltransf_25 Kdo RVT-GII GIIM PRK09579 RND_mfp Neighborhood of RT #9 [5119548, 5126365] PRK10788 RVT-GII GIIM DUF2242 Arabinose_bd AraC Neighborhood of RT #10 [5551604, 5558413] PBP2_PotF PAD_porph RVT-GII GIIM LipA PRK13034 Feature: gene Location: 588424-588591 bp Feature: gene Location: 588774-589670 bp Ori: CRL47529.1 Gene: dmlR_4 Feature: domain Description: LysR Location: 588786-589656 bp Feature: domain Description: LysR Location: 588786-589656 bp Feature: gene Location: 589902-591152 bp Ori: CRL47530.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 590094-590709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 590094-590709 bp Feature: domain Description: GIIM Note: maturase Location: 590766-590991 bp Feature: domain Description: GIIM Note: maturase Location: 590766-590991 bp Feature: gene Location: 591792-592418 bp Ori: CRL47531.1 Feature: domain Description: YcaC_related Location: 591837-592314 bp Feature: domain Description: YcaC_related Location: 591 837-59231 4 bp Feature: gene Location: 592488-594326 bp Ori: CRL47532.1 Gene: nfdA_1 Feature: domain Description: YtcJ Location: 592491-594090 bp Feature: domain Description: YtcJ Location: 592491 -594090 bp Feature: gene Location: 713582-714037 bp Ori: CRL47653.1 Feature: domain Description: DUF2214 Location: 713597-714026 bp Feature: domain Description: DUF221 4 Location: 71 3597-71 4026 bp Feature: gene Location: 714498-715250 bp Ori: CRL47654.1 Gene: mtcA2 Feature: domain Description: beta_CA_cladeC Location: 714675-715242 bp Feature: domain Description: beta_CA_cladeC Location: 71 4675-71 5242 bp Feature: gene Location: 715355-716605 bp Ori: CRL47655.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 715547-716162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 5547-71 61 62 bp Feature: domain Description: GIIM Note: maturase Location: 716219-716444 bp Feature: domain Description: GIIM Note: maturase Location: 71 621 9-71 6444 bp Feature: gene Location: 717231-717425 bp Feature: gene Location: 717488-717910 bp Ori: CRL47657.1 Feature: domain Description: RDD Location: 717539-717884 bp Feature: domain Description: RDD Location: 71 7539-71 7884 bp Feature: gene Location: 1668587-1669684 bp Ori: CRL48547.1 Feature: domain Description: OafA Location: 1668593-1669652 bp Feature: domain Description: OafA Location: 1 668593-1 669652 bp Feature: gene Location: 1670422-1670718 bp Ori: CRL48548.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 1670425-1670683 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 1 670425-1 670683 bp Feature: gene Location: 1671446-1672696 bp Ori: CRL48549.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1671638-1672253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 671 638-1 672253 bp Feature: domain Description: GIIM Note: maturase Location: 1672310-1672535 bp Feature: domain Description: GIIM Note: maturase Location: 1 67231 0-1 672535 bp Feature: gene Location: 1673343-1674350 bp Ori: CRL48550.1 Gene: rpoS Feature: domain Description: PRK05657 Location: 1673373-1674345 bp Feature: domain Description: PRK05657 Location: 1 673373-1 674345 bp Feature: gene Location: 1674457-1675314 bp Ori: CRL48551.1 Gene: nlpD Feature: domain Description: nlpD Location: 1674631-1674796 bp Feature: domain Description: nlpD Location: 1 674631 -1 674796 bp Feature: domain Description: nlpD Location: 1674808-1675312 bp Feature: domain Description: nlpD Location: 1 674808-1 67531 2 bp Feature: gene Location: 2015403-2016383 bp Ori: CRL48858.1 Gene: gsiA_2 Feature: domain Description: dppF Location: 2015409-2016372 bp Feature: domain Description: dppF Location: 201 5409-201 6372 bp Feature: gene Location: 2016481-2016735 bp Feature: gene Location: 2017004-2018254 bp Ori: CRL48860.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2017196-2017811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 71 96-201 781 1 bp Feature: domain Description: GIIM Note: maturase Location: 2017868-2018093 bp Feature: domain Description: GIIM Note: maturase Location: 201 7868-201 8093 bp Feature: gene Location: 2018902-2020485 bp Ori: CRL48861.1 Gene: prfC Feature: domain Description: prfC Location: 2018914-2020480 bp Feature: domain Description: prfC Location: 201 891 4-2020480 bp Feature: gene Location: 2020976-2021692 bp Ori: CRL48862.1 Gene: opuCD Feature: domain Description: OpuBB Location: 2021066-2021675 bp Feature: domain Description: OpuBB Location: 2021 066-2021 675 bp Feature: gene Location: 2095473-2095724 bp Feature: gene Location: 2096442-2096891 bp Feature: gene Location: 2097419-2099182 bp Ori: CRL48924.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2097548-2098175 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2097548-20981 75 bp Feature: gene Location: 2099665-2100837 bp Ori: CRL48925.1 Feature: domain Description: HHH_3 Location: 2100652-2100814 bp Feature: domain Description: HHH_3 Location: 21 00652-21 0081 4 bp Feature: gene Location: 2102083-2102925 bp Feature: gene Location: 3437640-3438191 bp Ori: CRL50081.1 Feature: domain Description: CybB Location: 3437652-3438186 bp Feature: domain Description: CybB Location: 3437652-34381 86 bp Feature: gene Location: 3438223-3438816 bp Ori: CRL50082.1 Gene: yceI_1 Feature: domain Description: PRK03757 Location: 3438229-3438808 bp Feature: domain Description: PRK03757 Location: 3438229-3438808 bp Feature: gene Location: 3439466-3440716 bp Ori: CRL50083.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3439658-3440273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3439658-3440273 bp Feature: domain Description: GIIM Note: maturase Location: 3440330-3440555 bp Feature: domain Description: GIIM Note: maturase Location: 3440330-3440555 bp Feature: gene Location: 3440985-3442862 bp Ori: CRL50084.1 Gene: rhlE_2 Feature: domain Description: PRK10590 Location: 3440988-3442383 bp Feature: domain Description: PRK1 0590 Location: 3440988-3442383 bp Feature: gene Location: 3443086-3443901 bp Ori: CRL50085.1 Gene: yxeM Feature: domain Description: PBP2_HisK Location: 3443173-3443812 bp Feature: domain Description: PBP2_HisK Location: 34431 73-344381 2 bp Feature: gene Location: 4079130-4080485 bp Ori: CRL50656.1 Gene: trpS Feature: domain Description: PRK12284 Location: 4079142-4080468 bp Feature: domain Description: PRK1 2284 Location: 40791 42-4080468 bp Feature: gene Location: 4080652-4081671 bp Ori: CRL50657.1 Feature: domain Description: AFG1_ATPase Location: 4080655-4081657 bp Feature: domain Description: AFG1 _ATPase Location: 4080655-4081 657 bp Feature: gene Location: 4082314-4083564 bp Ori: CRL50658.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4082506-4083121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4082506-40831 21 bp Feature: domain Description: GIIM Note: maturase Location: 4083178-4083403 bp Feature: domain Description: GIIM Note: maturase Location: 40831 78-4083403 bp Feature: gene Location: 4083786-4084781 bp Ori: CRL50659.1 Gene: cdhR_9 Feature: domain Description: GlxA Location: 4083813-4084773 bp Feature: domain Description: GlxA Location: 408381 3-4084773 bp Feature: gene Location: 4084926-4086062 bp Ori: CRL50660.1 Gene: mmgC_6 Feature: domain Description: LCAD Location: 4084956-4086060 bp Feature: domain Description: LCAD Location: 4084956-4086060 bp Feature: gene Location: 4325571-4326242 bp Ori: CRL50873.1 Gene: ubiE_3 Feature: domain Description: Methyltransf_25 Location: 4325739-4326024 bp Feature: domain Description: Methyltransf_25 Location: 4325739-4326024 bp Feature: gene Location: 4326247-4326960 bp Ori: CRL50874.1 Feature: domain Description: Kdo Location: 4326307-4326925 bp Feature: domain Description: Kdo Location: 4326307-4326925 bp Feature: gene Location: 4327834-4329084 bp Ori: CRL50875.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4328026-4328641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4328026-4328641 bp Feature: domain Description: GIIM Note: maturase Location: 4328698-4328923 bp Feature: domain Description: GIIM Note: maturase Location: 4328698-4328923 bp Feature: gene Location: 4329273-4332308 bp Ori: CRL50876.1 Gene: acrB Feature: domain Description: PRK09579 Location: 4329276-4332300 bp Feature: domain Description: PRK09579 Location: 4329276-4332300 bp Feature: gene Location: 4332322-4333470 bp Ori: CRL50877.1 Gene: mdtA_5 Feature: domain Description: RND_mfp Location: 4332454-4333420 bp Feature: domain Description: RND_mfp Location: 4332454-4333420 bp Feature: gene Location: 5119548-5119994 bp Feature: gene Location: 5120123-5121994 bp Ori: CRL51580.1 Gene: ppiD Feature: domain Description: PRK10788 Location: 5120126-5121986 bp Feature: domain Description: PRK1 0788 Location: 51 201 26-51 21 986 bp Feature: gene Location: 5122646-5123896 bp Ori: CRL51581.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5122838-5123453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 22838-51 23453 bp Feature: domain Description: GIIM Note: maturase Location: 5123510-5123735 bp Feature: domain Description: GIIM Note: maturase Location: 51 2351 0-51 23735 bp Feature: gene Location: 5124142-5124981 bp Ori: CRL51582.1 Feature: domain Description: DUF2242 Location: 5124301-5124661 bp Feature: domain Description: DUF2242 Location: 51 24301 -51 24661 bp Feature: gene Location: 5125325-5126365 bp Ori: CRL51583.1 Gene: ureR_3 Feature: domain Description: Arabinose_bd Location: 5125406-5125958 bp Feature: domain Description: Arabinose_bd Location: 51 25406-51 25958 bp Feature: domain Description: AraC Location: 5126033-5126348 bp Feature: domain Description: AraC Location: 51 26033-51 26348 bp Feature: gene Location: 5551604-5552707 bp Ori: CRL51935.1 Gene: potF_9 Feature: domain Description: PBP2_PotF Location: 5551691-5552678 bp Feature: domain Description: PBP2_PotF Location: 5551 691 -5552678 bp Feature: gene Location: 5552778-5553884 bp Ori: CRL51936.1 Gene: aguA_4 Feature: domain Description: PAD_porph Location: 5552886-5553876 bp Feature: domain Description: PAD_porph Location: 5552886-5553876 bp Feature: gene Location: 5554730-5555980 bp Ori: CRL51937.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5554922-5555537 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5554922-5555537 bp Feature: domain Description: GIIM Note: maturase Location: 5555594-5555819 bp Feature: domain Description: GIIM Note: maturase Location: 5555594-555581 9 bp Feature: gene Location: 5556084-5557064 bp Ori: CRL51938.1 Gene: lipA_2 Feature: domain Description: LipA Location: 5556156-5557056 bp Feature: domain Description: LipA Location: 55561 56-5557056 bp Feature: gene Location: 5557157-5558413 bp Ori: CRL51939.1 Gene: glyA2_3 Feature: domain Description: PRK13034 Location: 5557166-5558405 bp Feature: domain Description: PRK1 3034 Location: 55571 66-5558405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), RVT-GII, GIIM (pfam08388), YcaC_related (cd01012), YtcJ (COG1574), DUF2214 (pfam09980), beta_CA_cladeC (cd03378), RDD (pfam06271), OafA (COG1835), DDE_Tnp_ISL3 (pfam01610)
PRK05657 (RNA polymerase sigma factor RpoS; Validated), nlpD (PRK10871), dppF (PRK11308), prfC (TIGR00503), OpuBB (COG1174), RVT-Retrons, HHH_3 (pfam12836), CybB (COG3038), PRK03757 (YceI family protein), PRK10590 (ATP-dependent RNA helicase RhlE; Provisional)
PBP2_HisK (cd13704), PRK12284 (tryptophanyl-tRNA synthetase; Reviewed), AFG1_ATPase (pfam03969), GlxA (COG4977), LCAD (cd01160), Methyltransf_25 (pfam13649), Kdo (pfam06293), PRK09579 (multidrug efflux RND transporter permease subunit), RND_mfp (TIGR01730), PRK10788 (periplasmic folding chaperone; Provisional)
DUF2242 (pfam10001), Arabinose_bd (pfam12625), AraC (COG2207), PBP2_PotF (cd13659), PAD_porph (pfam04371), LipA (COG0320), PRK13034 (serine hydroxymethyltransferase; Reviewed)