myRT

myRT report for GCA_001513655.1_ASM151365v1

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Seq: CP013837.1 Escherichia coli strain JJ1897, complete genome (5174541 bp)
Overview 1 RT 1: 1278096-1281515 bp 2 RT 2: 1487948-1494801 bp Neighborhood of RT #1 [1278096, 1281535] DDE_Tnp_1 RVT-GII GIIM PHA02517 GrsT Neighborhood of RT #2 [1487948, 1494801] PRK11388 RVT-Retrons Feature: gene Location: 1278096-1278812 bp Ori: ALX62020.1 Feature: domain Description: DDE_Tnp_1 Location: 1278102-1278744 bp Feature: domain Description: DDE_Tnp_1 Location: 1 2781 02-1 278744 bp Feature: gene Location: 1278973-1279206 bp Feature: gene Location: 1279263-1280645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1279395-1280127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 279395-1 2801 27 bp Feature: domain Description: GIIM Note: maturase Location: 1280202-1280400 bp Feature: domain Description: GIIM Note: maturase Location: 1 280202-1 280400 bp Feature: gene Location: 1280822-1281208 bp Ori: ALX65362.1 Feature: domain Description: PHA02517 Location: 1280825-1281206 bp Feature: domain Description: PHA0251 7 Location: 1 280825-1 281 206 bp Feature: gene Location: 1281251-1281535 bp Feature: domain Description: GrsT Location: 1281254-1281515 bp Feature: domain Description: GrsT Location: 1 281 254-1 281 51 5 bp Feature: gene Location: 1487948-1489867 bp Ori: ALX62235.1 Feature: domain Description: PRK11388 Location: 1487951-1489859 bp Feature: domain Description: PRK1 1 388 Location: 1 487951 -1 489859 bp Feature: gene Location: 1489903-1490133 bp Feature: gene Location: 1491158-1492915 bp Ori: ALX62237.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1491302-1491920 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 491 302-1 491 920 bp Feature: gene Location: 1493162-1494289 bp Feature: gene Location: 1494286-1494801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), GrsT (COG3208), PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons