myRT

myRT report for GCA_001513745.1_ASM151374v1

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Seq: CP013380.1 Burkholderia sp. Bp5365 strain MSMB43 chromosome 1, complete sequence (4069152 bp)
Overview 1 RT 1: 109752-117016 bp 2 RT 2: 499886-504571 bp 3 RT 3: 822053-826753 bp 4 RT 4: 1217209-1223993 bp 5 RT 5: 1803355-1810521 bp 6 RT 6: 1900242-1908037 bp 7 RT 7: 2271029-2276222 bp 8 RT 8: 2599672-2605334 bp Neighborhood of RT #1 [109752, 117033] LivM LivG LivF RVT-GII GIIM PRK05192 gidB Neighborhood of RT #2 [499886, 504735] InsE TnpB_IS66 RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Integrase_1 Neighborhood of RT #3 [822053, 826782] PurM RVT-GII GIIM TIGR02246 miaA Neighborhood of RT #4 [1217209, 1223998] KOG3954 AcylCoA_DH_N ACAD_fadE5 Acyl-CoA_dh_C RVT-GII GIIM PRK00711 PRK11169 Neighborhood of RT #5 [1803355, 1810586] PRK11014 chaperone_ClpB RVT-GII GIIM DEDD_Tnp_IS110 HHH_5 Transposase_20 YidB Neighborhood of RT #6 [1900242, 1908072] RVT-UG7 RVT_1 Transposase_mut INT_Rci_Hp1_C Neighborhood of RT #7 [2271029, 2276260] Flp COG3464 RVT-GII GIIM TauA PRK10406 Neighborhood of RT #8 [2599672, 2605342] ArdA RVT-GII GIIM PRK12554 Feature: gene Location: 109752-111536 bp Ori: ALX41055.1 Feature: domain Description: LivM Location: 109782-110703 bp Feature: domain Description: LivM Location: 1 09782-1 1 0703 bp Feature: domain Description: LivG Location: 110784-111525 bp Feature: domain Description: LivG Location: 1 1 0784-1 1 1 525 bp Feature: gene Location: 111536-112294 bp Ori: ALX41056.1 Feature: domain Description: LivF Location: 111560-112274 bp Feature: domain Description: LivF Location: 1 1 1 560-1 1 2274 bp Feature: gene Location: 112937-114196 bp Ori: ALX44169.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113129-113744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 31 29-1 1 3744 bp Feature: domain Description: GIIM Note: maturase Location: 113798-114014 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 3798-1 1 401 4 bp Feature: gene Location: 114368-116341 bp Ori: ALX41057.1 Gene: gidA Feature: domain Description: PRK05192 Location: 114386-116270 bp Feature: domain Description: PRK051 92 Location: 1 1 4386-1 1 6270 bp Feature: gene Location: 116392-117033 bp Ori: ALX41058.1 Feature: domain Description: gidB Location: 116455-117016 bp Feature: domain Description: gidB Location: 1 1 6455-1 1 701 6 bp Feature: gene Location: 499886-500311 bp Ori: ALX44195.1 Feature: domain Description: InsE Location: 499952-500174 bp Feature: domain Description: InsE Location: 499952-5001 74 bp Feature: gene Location: 500308-500640 bp Ori: ALX41380.1 Feature: domain Description: TnpB_IS66 Location: 500335-500623 bp Feature: domain Description: TnpB_IS66 Location: 500335-500623 bp Feature: gene Location: 500970-502451 bp Ori: ALX41381.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501381-502071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 381 -502071 bp Feature: gene Location: 502595-504148 bp Ori: ALX41382.1 Feature: domain Description: LZ_Tnp_IS66 Location: 502697-502910 bp Feature: domain Description: LZ_Tnp_IS66 Location: 502697-50291 0 bp Feature: domain Description: zf-IS66 Location: 502937-503057 bp Feature: domain Description: zf-IS66 Location: 502937-503057 bp Feature: domain Description: DDE_Tnp_IS66 Location: 503108-503963 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5031 08-503963 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 503987-504095 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 503987-504095 bp Feature: gene Location: 504229-504735 bp Feature: domain Description: Integrase_1 Location: 504244-504571 bp Feature: domain Description: Integrase_1 Location: 504244-504571 bp Feature: gene Location: 822053-822271 bp Feature: gene Location: 822377-823432 bp Ori: ALX41637.1 Feature: domain Description: PurM Location: 822413-823421 bp Feature: domain Description: PurM Location: 82241 3-823421 bp Feature: gene Location: 824076-825335 bp Ori: ALX44221.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824268-824883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 824268-824883 bp Feature: domain Description: GIIM Note: maturase Location: 824937-825153 bp Feature: domain Description: GIIM Note: maturase Location: 824937-8251 53 bp Feature: gene Location: 825586-825780 bp Ori: ALX41638.1 Feature: domain Description: TIGR02246 Location: 825595-825751 bp Feature: domain Description: TIGR02246 Location: 825595-825751 bp Feature: gene Location: 825808-826782 bp Ori: ALX41639.1 Feature: domain Description: miaA Location: 825838-826753 bp Feature: domain Description: miaA Location: 825838-826753 bp Feature: gene Location: 1217209-1218144 bp Ori: ALX41966.1 Feature: domain Description: KOG3954 Location: 1217215-1218139 bp Feature: domain Description: KOG3954 Location: 1 21 721 5-1 21 81 39 bp Feature: gene Location: 1218258-1220048 bp Ori: ALX41967.1 Feature: domain Description: AcylCoA_DH_N Location: 1218264-1218354 bp Feature: domain Description: AcylCoA_DH_N Location: 1 21 8264-1 21 8354 bp Feature: domain Description: ACAD_fadE5 Location: 1218378-1219620 bp Feature: domain Description: ACAD_fadE5 Location: 1 21 8378-1 21 9620 bp Feature: domain Description: Acyl-CoA_dh_C Location: 1219656-1219998 bp Feature: domain Description: Acyl-CoA_dh_C Location: 1 21 9656-1 21 9998 bp Feature: gene Location: 1220701-1221960 bp Ori: ALX44252.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1220893-1221508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 220893-1 221 508 bp Feature: domain Description: GIIM Note: maturase Location: 1221562-1221778 bp Feature: domain Description: GIIM Note: maturase Location: 1 221 562-1 221 778 bp Feature: gene Location: 1222078-1223364 bp Ori: ALX41968.1 Feature: domain Description: PRK00711 Location: 1222081-1223323 bp Feature: domain Description: PRK0071 1 Location: 1 222081 -1 223323 bp Feature: gene Location: 1223510-1223998 bp Ori: ALX41969.1 Feature: domain Description: PRK11169 Location: 1223519-1223993 bp Feature: domain Description: PRK1 1 1 69 Location: 1 22351 9-1 223993 bp Feature: gene Location: 1803355-1803852 bp Ori: ALX42415.1 Feature: domain Description: PRK11014 Location: 1803358-1803787 bp Feature: domain Description: PRK1 1 01 4 Location: 1 803358-1 803787 bp Feature: gene Location: 1804055-1806652 bp Ori: ALX42416.1 Feature: domain Description: chaperone_ClpB Location: 1804073-1806629 bp Feature: domain Description: chaperone_ClpB Location: 1 804073-1 806629 bp Feature: gene Location: 1807186-1808289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1807525-1808140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 807525-1 8081 40 bp Feature: domain Description: GIIM Note: maturase Location: 1808194-1808290 bp Feature: domain Description: GIIM Note: maturase Location: 1 8081 94-1 808290 bp Feature: gene Location: 1808308-1809513 bp Ori: ALX42417.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 1808350-1808812 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 808350-1 80881 2 bp Feature: domain Description: HHH_5 Location: 1808857-1808992 bp Feature: domain Description: HHH_5 Location: 1 808857-1 808992 bp Feature: domain Description: Transposase_20 Location: 1809139-1809382 bp Feature: domain Description: Transposase_20 Location: 1 8091 39-1 809382 bp Feature: gene Location: 1810164-1810586 bp Ori: ALX42418.1 Feature: domain Description: YidB Location: 1810185-1810521 bp Feature: domain Description: YidB Location: 1 81 01 85-1 81 0521 bp Feature: gene Location: 1900242-1900850 bp Feature: gene Location: 1900991-1903570 bp Feature: gene Location: 1904356-1905477 bp Ori: ALX42493.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1904365-1904659 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 904365-1 904659 bp Feature: domain Description: RVT_1 Location: 1904728-1904890 bp Feature: domain Description: RVT_1 Location: 1 904728-1 904890 bp Feature: gene Location: 1905524-1906801 bp Ori: ALX42494.1 Feature: domain Description: Transposase_mut Location: 1905542-1906694 bp Feature: domain Description: Transposase_mut Location: 1 905542-1 906694 bp Feature: gene Location: 1907083-1908072 bp Ori: ALX44319.1 Feature: domain Description: INT_Rci_Hp1_C Location: 1907587-1908037 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 907587-1 908037 bp Feature: gene Location: 2271029-2271220 bp Ori: ALX44354.1 Feature: domain Description: Flp Location: 2271032-2271200 bp Feature: domain Description: Flp Location: 2271 032-2271 200 bp Feature: gene Location: 2271708-2272166 bp Ori: ALX42749.1 Feature: domain Description: COG3464 Location: 2271744-2272020 bp Feature: domain Description: COG3464 Location: 2271 744-2272020 bp Feature: gene Location: 2272317-2273576 bp Ori: ALX44355.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2272509-2273124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2272509-22731 24 bp Feature: domain Description: GIIM Note: maturase Location: 2273178-2273394 bp Feature: domain Description: GIIM Note: maturase Location: 22731 78-2273394 bp Feature: gene Location: 2274376-2274714 bp Ori: ALX42750.1 Feature: domain Description: TauA Location: 2274445-2274706 bp Feature: domain Description: TauA Location: 2274445-2274706 bp Feature: gene Location: 2274956-2276260 bp Ori: ALX42751.1 Feature: domain Description: PRK10406 Location: 2274980-2276222 bp Feature: domain Description: PRK1 0406 Location: 2274980-2276222 bp Feature: gene Location: 2599672-2599950 bp Feature: gene Location: 2599960-2600361 bp Ori: ALX42999.1 Feature: domain Description: ArdA Location: 2600020-2600341 bp Feature: domain Description: ArdA Location: 2600020-2600341 bp Feature: gene Location: 2600468-2601727 bp Ori: ALX44383.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2600660-2601275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2600660-2601 275 bp Feature: domain Description: GIIM Note: maturase Location: 2601329-2601545 bp Feature: domain Description: GIIM Note: maturase Location: 2601 329-2601 545 bp Feature: gene Location: 2602411-2602677 bp Feature: gene Location: 2604512-2605342 bp Ori: ALX43001.1 Feature: domain Description: PRK12554 Location: 2604518-2605334 bp Feature: domain Description: PRK1 2554 Location: 260451 8-2605334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LivM (COG4177), LivG (COG0411), LivF (COG0410), RVT-GII, GIIM (pfam08388), PRK05192 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG), gidB (PRK00107), InsE (COG2963), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007)
zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), Integrase_1 (pfam12835), PurM (COG0150), TIGR02246 (conserved hypothetical protein), miaA (TIGR00174), KOG3954 (KOG3954, Electron transfer flavoprotein, alpha subunit ), AcylCoA_DH_N (pfam12418), ACAD_fadE5 (cd01153)
Acyl-CoA_dh_C (pfam12806), PRK00711 (D-amino acid dehydrogenase), PRK11169 (leucine-responsive transcriptional regulator Lrp), PRK11014 (HTH-type transcriptional repressor NsrR), chaperone_ClpB (TIGR03346), DEDD_Tnp_IS110 (pfam01548), HHH_5 (pfam14520), Transposase_20 (pfam02371), YidB (COG3753), RVT-UG7
RVT_1 (pfam00078), Transposase_mut (pfam00872), INT_Rci_Hp1_C (cd00796), Flp (COG3847), COG3464 (Transposase ), TauA (COG4521), PRK10406 (alpha-ketoglutarate transporter; Provisional), ArdA (pfam07275), PRK12554 (undecaprenyl pyrophosphate phosphatase; Reviewed)

Seq: CP013382.1 Burkholderia sp. Bp5365 strain MSMB43 chromosome 2, complete sequence (2913543 bp)
Overview 1 RT 1: 2255859-2261264 bp 2 RT 2: 2371767-2377231 bp Neighborhood of RT #1 [2255859, 2261401] Transposase_mut LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII TnpB_IS66 InsE Neighborhood of RT #2 [2371767, 2377231] DUF1566 Avd_like RVT-DGRs Dcm Dcm Feature: gene Location: 2255859-2257136 bp Ori: ALX46345.1 Feature: domain Description: Transposase_mut Location: 2255877-2257029 bp Feature: domain Description: Transposase_mut Location: 2 2 55877-2 2 5702 9 bp Feature: gene Location: 2257254-2258693 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2257356-2257569 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 2 57356-2 2 57569 bp Feature: domain Description: zf-IS66 Location: 2257596-2257716 bp Feature: domain Description: zf-IS66 Location: 2 2 57596-2 2 57716 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2257767-2258622 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 2 57767-2 2 5862 2 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2258646-2258694 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 2 58646-2 2 58694 bp Feature: gene Location: 2258836-2260317 bp Ori: ALX46346.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2259247-2259937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 592 47-2 2 59937 bp Feature: gene Location: 2260647-2260979 bp Ori: ALX46347.1 Feature: domain Description: TnpB_IS66 Location: 2260674-2260962 bp Feature: domain Description: TnpB_IS66 Location: 2 2 60674-2 2 60962 bp Feature: gene Location: 2260976-2261401 bp Ori: ALX47072.1 Feature: domain Description: InsE Location: 2261042-2261264 bp Feature: domain Description: InsE Location: 2 2 61042 -2 2 612 64 bp Feature: gene Location: 2371767-2372231 bp Ori: ALX46445.1 Feature: domain Description: DUF1566 Location: 2372028-2372208 bp Feature: domain Description: DUF1566 Location: 2 372 02 8-2 372 2 08 bp Feature: gene Location: 2372246-2372620 bp Ori: ALX46446.1 Feature: domain Description: Avd_like Location: 2372273-2372579 bp Feature: domain Description: Avd_like Location: 2 372 2 73-2 372 579 bp Feature: gene Location: 2372943-2373953 bp Ori: ALX46447.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2373036-2373723 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 373036-2 37372 3 bp Feature: gene Location: 2373950-2375713 bp Ori: ALX46448.1 Feature: domain Description: Dcm Location: 2374001-2374448 bp Feature: domain Description: Dcm Location: 2 374001-2 374448 bp Feature: domain Description: Dcm Location: 2374544-2375669 bp Feature: domain Description: Dcm Location: 2 374544-2 375669 bp Feature: gene Location: 2375732-2377231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, TnpB_IS66 (pfam05717), InsE (COG2963), DUF1566 (pfam07603), Avd_like (cd16376)
RVT-DGRs, Dcm (COG0270)