myRT

myRT report for GCA_001515915.2_ASM151591v2

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Seq: CP008866.2 Pseudomonas aeruginosa strain T38079, complete genome (6795741 bp)
Overview 1 RT 1: 638484-648790 bp 2 RT 2: 4106912-4114200 bp 3 RT 3: 6153321-6158052 bp Neighborhood of RT #1 [638484, 648792] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [4106912, 4114262] HxlR PRK06333 RVT-UG2 YHI9 STN TonB-siderophor Neighborhood of RT #3 [6153321, 6158052] InsE IS5 RVT_N RVT-GII GIIM IS5 Feature: gene Location: 638484-639605 bp Ori: ALY96235.1 Feature: domain Description: COG3177 Location: 638502-639594 bp Feature: domain Description: COG31 77 Location: 638502-639594 bp Feature: gene Location: 639864-640001 bp Feature: gene Location: 640329-642014 bp Ori: ALY96233.1 Feature: domain Description: RVT_N Location: 640386-640626 bp Feature: domain Description: RVT_N Location: 640386-640626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640674-641310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 640674-641 31 0 bp Feature: domain Description: GIIM Note: maturase Location: 641364-641595 bp Feature: domain Description: GIIM Note: maturase Location: 641 364-641 595 bp Feature: domain Description: HNH Note: nucleases Location: 641847-641985 bp Feature: domain Description: HNH Note: nucleases Location: 641 847-641 985 bp Feature: gene Location: 643095-646832 bp Ori: ALY96232.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 643203-643860 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 643203-643860 bp Feature: domain Description: PRK09776 Location: 644073-644544 bp Feature: domain Description: PRK09776 Location: 644073-644544 bp Feature: domain Description: PAS Location: 644601-645126 bp Feature: domain Description: PAS Location: 644601 -6451 26 bp Feature: domain Description: PRK10060 Location: 645135-646782 bp Feature: domain Description: PRK1 0060 Location: 6451 35-646782 bp Feature: gene Location: 646939-648792 bp Ori: ALY96231.1 Feature: domain Description: PRK05658 Location: 646951-648790 bp Feature: domain Description: PRK05658 Location: 646951 -648790 bp Feature: gene Location: 4106912-4107418 bp Ori: ALY99197.1 Feature: domain Description: HxlR Location: 4106936-4107254 bp Feature: domain Description: HxlR Location: 41 06936-41 07254 bp Feature: gene Location: 4107527-4108795 bp Ori: ALY99196.1 Feature: domain Description: PRK06333 Location: 4107533-4108790 bp Feature: domain Description: PRK06333 Location: 41 07533-41 08790 bp Feature: gene Location: 4109351-4110640 bp Ori: ALY99195.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 4109543-4110329 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 41 09543-41 1 0329 bp Feature: gene Location: 4110824-4111660 bp Ori: ALY99194.1 Feature: domain Description: YHI9 Location: 4110836-4111652 bp Feature: domain Description: YHI9 Location: 41 1 0836-41 1 1 652 bp Feature: gene Location: 4111821-4114262 bp Ori: ALY99193.1 Feature: domain Description: STN Location: 4111980-4112133 bp Feature: domain Description: STN Location: 41 1 1 980-41 1 21 33 bp Feature: domain Description: TonB-siderophor Location: 4112241-4114200 bp Feature: domain Description: TonB-siderophor Location: 41 1 2241 -41 1 4200 bp Feature: gene Location: 6153321-6154471 bp Feature: domain Description: InsE Location: 6153330-6153603 bp Feature: domain Description: InsE Location: 61 53330-61 53603 bp Feature: gene Location: 6154491-6154793 bp Feature: domain Description: IS5 Location: 6154494-6154785 bp Feature: domain Description: IS5 Location: 61 54494-61 54785 bp Feature: gene Location: 6155389-6156894 bp Ori: ALY97367.1 Feature: domain Description: RVT_N Location: 6155470-6155695 bp Feature: domain Description: RVT_N Location: 61 55470-61 55695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6155746-6156388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 55746-61 56388 bp Feature: domain Description: GIIM Note: maturase Location: 6156439-6156673 bp Feature: domain Description: GIIM Note: maturase Location: 61 56439-61 56673 bp Feature: gene Location: 6156967-6157425 bp Feature: domain Description: IS5 Location: 6156973-6157399 bp Feature: domain Description: IS5 Location: 61 56973-61 57399 bp Feature: gene Location: 6157609-6158052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
HxlR (pfam01638), PRK06333 (beta-ketoacyl-ACP synthase), RVT-UG2, YHI9 (COG0384), STN (smart00965), TonB-siderophor (TIGR01783), InsE (COG2963), IS5 (COG3039)