myRT

myRT report for GCA_001516165.2_ASM151616v2

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Seq: CP008869.2 Pseudomonas aeruginosa strain W16407, complete genome (6808844 bp)
Overview 1 RT 1: 622594-632899 bp 2 RT 2: 649158-657325 bp Neighborhood of RT #1 [622594, 632901] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [649158, 657339] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Feature: gene Location: 622594-623715 bp Ori: ALZ15858.1 Feature: domain Description: COG3177 Location: 622612-623704 bp Feature: domain Description: COG31 77 Location: 62261 2-623704 bp Feature: gene Location: 623974-624111 bp Feature: gene Location: 624439-626124 bp Ori: ALZ15856.1 Feature: domain Description: RVT_N Location: 624496-624736 bp Feature: domain Description: RVT_N Location: 624496-624736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 624784-625420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 624784-625420 bp Feature: domain Description: GIIM Note: maturase Location: 625474-625705 bp Feature: domain Description: GIIM Note: maturase Location: 625474-625705 bp Feature: domain Description: HNH Note: nucleases Location: 625957-626095 bp Feature: domain Description: HNH Note: nucleases Location: 625957-626095 bp Feature: gene Location: 627204-630941 bp Ori: ALZ15855.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 627312-627969 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 62731 2-627969 bp Feature: domain Description: PRK09776 Location: 628182-628653 bp Feature: domain Description: PRK09776 Location: 6281 82-628653 bp Feature: domain Description: PAS Location: 628725-629235 bp Feature: domain Description: PAS Location: 628725-629235 bp Feature: domain Description: PRK10060 Location: 629244-630891 bp Feature: domain Description: PRK1 0060 Location: 629244-630891 bp Feature: gene Location: 631048-632901 bp Ori: ALZ15854.1 Feature: domain Description: PRK05658 Location: 631060-632899 bp Feature: domain Description: PRK05658 Location: 631 060-632899 bp Feature: gene Location: 649158-650450 bp Ori: ALZ15836.1 Feature: domain Description: PRK10770 Location: 649248-650442 bp Feature: domain Description: PRK1 0770 Location: 649248-650442 bp Feature: gene Location: 650431-653205 bp Ori: ALZ15835.1 Feature: domain Description: LptD Location: 650626-653191 bp Feature: domain Description: LptD Location: 650626-6531 91 bp Feature: gene Location: 653338-655050 bp Ori: ALZ15834.1 Feature: domain Description: RVT_N Location: 653395-653638 bp Feature: domain Description: RVT_N Location: 653395-653638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653683-654319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653683-65431 9 bp Feature: domain Description: YkfC Location: 654529-654679 bp Feature: domain Description: YkfC Location: 654529-654679 bp Feature: domain Description: HNH Note: nucleases Location: 654856-654994 bp Feature: domain Description: HNH Note: nucleases Location: 654856-654994 bp Feature: gene Location: 655238-655450 bp Feature: gene Location: 656323-657339 bp Ori: ALZ15833.1 Feature: domain Description: COG3178 Location: 656326-657325 bp Feature: domain Description: COG31 78 Location: 656326-657325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family )