myRT

myRT report for GCA_001516205.2_ASM151620v2

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Seq: CP008871.2 Pseudomonas aeruginosa strain W45909, complete genome (6777566 bp)
Overview 1 RT 1: 625218-635524 bp 2 RT 2: 651783-659959 bp 3 RT 3: 1078474-1085284 bp 4 RT 4: 3232135-3239200 bp Neighborhood of RT #1 [625218, 635526] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [651783, 659973] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Neighborhood of RT #3 [1078474, 1085481] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Neighborhood of RT #4 [3232135, 3239631] UlaG IS5 RVT_N RVT-GII GIIM IS5 AAA_22 Feature: gene Location: 625218-626339 bp Ori: ALZ27955.1 Feature: domain Description: COG3177 Location: 625236-626328 bp Feature: domain Description: COG31 77 Location: 625236-626328 bp Feature: gene Location: 626598-626735 bp Feature: gene Location: 627063-628748 bp Ori: ALZ27953.1 Feature: domain Description: RVT_N Location: 627120-627360 bp Feature: domain Description: RVT_N Location: 6271 20-627360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 627408-628044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 627408-628044 bp Feature: domain Description: GIIM Note: maturase Location: 628098-628329 bp Feature: domain Description: GIIM Note: maturase Location: 628098-628329 bp Feature: domain Description: HNH Note: nucleases Location: 628581-628719 bp Feature: domain Description: HNH Note: nucleases Location: 628581 -62871 9 bp Feature: gene Location: 629829-633566 bp Ori: ALZ27952.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 629937-630594 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 629937-630594 bp Feature: domain Description: PRK09776 Location: 630807-631278 bp Feature: domain Description: PRK09776 Location: 630807-631 278 bp Feature: domain Description: PAS Location: 631335-631860 bp Feature: domain Description: PAS Location: 631 335-631 860 bp Feature: domain Description: PRK10060 Location: 631869-633516 bp Feature: domain Description: PRK1 0060 Location: 631 869-63351 6 bp Feature: gene Location: 633673-635526 bp Ori: ALZ27951.1 Feature: domain Description: PRK05658 Location: 633685-635524 bp Feature: domain Description: PRK05658 Location: 633685-635524 bp Feature: gene Location: 651783-653075 bp Ori: ALZ27933.1 Feature: domain Description: PRK10770 Location: 651873-653067 bp Feature: domain Description: PRK1 0770 Location: 651 873-653067 bp Feature: gene Location: 653056-655839 bp Ori: ALZ27932.1 Feature: domain Description: LptD Location: 653251-655825 bp Feature: domain Description: LptD Location: 653251 -655825 bp Feature: gene Location: 655972-657684 bp Ori: ALZ27931.1 Feature: domain Description: RVT_N Location: 656029-656272 bp Feature: domain Description: RVT_N Location: 656029-656272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 656317-656953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65631 7-656953 bp Feature: domain Description: YkfC Location: 657160-657313 bp Feature: domain Description: YkfC Location: 6571 60-65731 3 bp Feature: domain Description: HNH Note: nucleases Location: 657490-657628 bp Feature: domain Description: HNH Note: nucleases Location: 657490-657628 bp Feature: gene Location: 657872-658084 bp Feature: gene Location: 658957-659973 bp Ori: ALZ27930.1 Feature: domain Description: COG3178 Location: 658960-659959 bp Feature: domain Description: COG31 78 Location: 658960-659959 bp Feature: gene Location: 1078474-1079301 bp Ori: ALZ27545.1 Feature: domain Description: ABC_phnC Location: 1078504-1079218 bp Feature: domain Description: ABC_phnC Location: 1 078504-1 07921 8 bp Feature: gene Location: 1079644-1080154 bp Feature: domain Description: DUF772 Location: 1079794-1079989 bp Feature: domain Description: DUF772 Location: 1 079794-1 079989 bp Feature: gene Location: 1080674-1081942 bp Ori: ALZ27543.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1080887-1081544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 080887-1 081 544 bp Feature: domain Description: GIIM Note: maturase Location: 1081622-1081844 bp Feature: domain Description: GIIM Note: maturase Location: 1 081 622-1 081 844 bp Feature: gene Location: 1082092-1082418 bp Feature: gene Location: 1083937-1085481 bp Ori: ALZ27542.1 Feature: domain Description: CHD Location: 1084153-1084567 bp Feature: domain Description: CHD Location: 1 0841 53-1 084567 bp Feature: domain Description: CHD Location: 1084795-1085284 bp Feature: domain Description: CHD Location: 1 084795-1 085284 bp Feature: gene Location: 3232135-3233154 bp Ori: ALZ25635.1 Feature: domain Description: UlaG Location: 3232375-3233071 bp Feature: domain Description: UlaG Location: 3232375-3233071 bp Feature: gene Location: 3233900-3234358 bp Feature: domain Description: IS5 Location: 3233906-3234326 bp Feature: domain Description: IS5 Location: 3233906-3234326 bp Feature: gene Location: 3234431-3235936 bp Ori: ALZ25634.1 Feature: domain Description: RVT_N Location: 3234512-3234737 bp Feature: domain Description: RVT_N Location: 323451 2-3234737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3234788-3235430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3234788-3235430 bp Feature: domain Description: GIIM Note: maturase Location: 3235481-3235715 bp Feature: domain Description: GIIM Note: maturase Location: 3235481 -323571 5 bp Feature: gene Location: 3236532-3237062 bp Feature: domain Description: IS5 Location: 3236721-3237054 bp Feature: domain Description: IS5 Location: 3236721 -3237054 bp Feature: gene Location: 3238690-3239631 bp Ori: ARH18768.1 Feature: domain Description: AAA_22 Location: 3238798-3239200 bp Feature: domain Description: AAA_22 Location: 3238798-3239200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), ABC_phnC (TIGR02315), DUF772 (pfam05598), CHD (cd07302), UlaG (COG2220), IS5 (COG3039), AAA_22 (pfam13401)