myRT

myRT report for GCA_001516345.1_ASM151634v1

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Seq: CP008861.1 Pseudomonas aeruginosa strain H47921, complete genome (6836415 bp)
Overview 1 RT 1: 3058143-3066987 bp 2 RT 2: 3083252-3094850 bp Neighborhood of RT #1 [3058143, 3066995] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [3083252, 3094969] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG4584 IstB_IS21 Feature: gene Location: 3058143-3058817 bp Ori: ALY66036.1 Feature: domain Description: NTP_transferase_like_1 Location: 3058149-3058788 bp Feature: domain Description: NTP_transferase_like_1 Location: 30581 49-3058788 bp Feature: gene Location: 3058814-3059830 bp Ori: ALY66037.1 Feature: domain Description: COG3178 Location: 3058817-3059816 bp Feature: domain Description: COG31 78 Location: 305881 7-305981 6 bp Feature: gene Location: 3061102-3062802 bp Ori: ALY66038.1 Feature: domain Description: RVT_N Location: 3061159-3061402 bp Feature: domain Description: RVT_N Location: 3061 1 59-3061 402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3061447-3062083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3061 447-3062083 bp Feature: domain Description: YkfC Location: 3062293-3062443 bp Feature: domain Description: YkfC Location: 3062293-3062443 bp Feature: domain Description: HNH Note: nucleases Location: 3062620-3062758 bp Feature: domain Description: HNH Note: nucleases Location: 3062620-3062758 bp Feature: gene Location: 3062948-3065722 bp Ori: ALY66039.1 Feature: domain Description: LptD Location: 3063143-3065708 bp Feature: domain Description: LptD Location: 30631 43-3065708 bp Feature: gene Location: 3065703-3066995 bp Ori: ALY66040.1 Feature: domain Description: PRK10770 Location: 3065793-3066987 bp Feature: domain Description: PRK1 0770 Location: 3065793-3066987 bp Feature: gene Location: 3083252-3085105 bp Ori: ALY66058.1 Feature: domain Description: PRK05658 Location: 3083264-3085103 bp Feature: domain Description: PRK05658 Location: 3083264-30851 03 bp Feature: gene Location: 3085212-3088949 bp Ori: ALY66059.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 3085320-3085977 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3085320-3085977 bp Feature: domain Description: PRK09776 Location: 3086190-3086661 bp Feature: domain Description: PRK09776 Location: 30861 90-3086661 bp Feature: domain Description: PAS Location: 3086706-3087243 bp Feature: domain Description: PAS Location: 3086706-3087243 bp Feature: domain Description: PRK10060 Location: 3087252-3088899 bp Feature: domain Description: PRK1 0060 Location: 3087252-3088899 bp Feature: gene Location: 3090030-3091715 bp Ori: ALY66060.1 Feature: domain Description: RVT_N Location: 3090087-3090327 bp Feature: domain Description: RVT_N Location: 3090087-3090327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3090375-3091011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3090375-3091 01 1 bp Feature: domain Description: GIIM Note: maturase Location: 3091065-3091296 bp Feature: domain Description: GIIM Note: maturase Location: 3091 065-3091 296 bp Feature: domain Description: HNH Note: nucleases Location: 3091548-3091686 bp Feature: domain Description: HNH Note: nucleases Location: 3091 548-3091 686 bp Feature: gene Location: 3092665-3094173 bp Ori: ALY66061.1 Feature: domain Description: COG4584 Location: 3092713-3093520 bp Feature: domain Description: COG4584 Location: 309271 3-3093520 bp Feature: gene Location: 3094166-3094969 bp Ori: ALY66062.1 Feature: domain Description: IstB_IS21 Location: 3094322-3094850 bp Feature: domain Description: IstB_IS21 Location: 3094322-3094850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG4584 (Transposase ), IstB_IS21 (pfam01695)