myRT

myRT report for GCA_001516365.2_ASM151636v2

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Seq: CP008862.2 Pseudomonas aeruginosa strain M1608, complete genome (6460023 bp)
Overview 1 RT 1: 676869-687174 bp 2 RT 2: 703433-711600 bp 3 RT 3: 1266028-1272838 bp Neighborhood of RT #1 [676869, 687176] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [703433, 711614] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 Neighborhood of RT #3 [1266028, 1273800] KOG0387 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf AdoMet_MTases Feature: gene Location: 676869-677990 bp Ori: ALY72689.1 Feature: domain Description: COG3177 Location: 676887-677979 bp Feature: domain Description: COG31 77 Location: 676887-677979 bp Feature: gene Location: 678249-678385 bp Feature: gene Location: 678713-680398 bp Ori: ALY72688.1 Feature: domain Description: RVT_N Location: 678770-679010 bp Feature: domain Description: RVT_N Location: 678770-67901 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679058-679694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679058-679694 bp Feature: domain Description: GIIM Note: maturase Location: 679748-679979 bp Feature: domain Description: GIIM Note: maturase Location: 679748-679979 bp Feature: domain Description: HNH Note: nucleases Location: 680231-680369 bp Feature: domain Description: HNH Note: nucleases Location: 680231 -680369 bp Feature: gene Location: 681479-685216 bp Ori: ALY72687.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 681587-682244 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 681 587-682244 bp Feature: domain Description: PRK09776 Location: 682457-682928 bp Feature: domain Description: PRK09776 Location: 682457-682928 bp Feature: domain Description: PAS Location: 682973-683510 bp Feature: domain Description: PAS Location: 682973-68351 0 bp Feature: domain Description: PRK10060 Location: 683519-685166 bp Feature: domain Description: PRK1 0060 Location: 68351 9-6851 66 bp Feature: gene Location: 685323-687176 bp Ori: ALY72686.1 Feature: domain Description: PRK05658 Location: 685335-687174 bp Feature: domain Description: PRK05658 Location: 685335-6871 74 bp Feature: gene Location: 703433-704725 bp Ori: ALY72668.1 Feature: domain Description: PRK10770 Location: 703523-704717 bp Feature: domain Description: PRK1 0770 Location: 703523-70471 7 bp Feature: gene Location: 704706-707480 bp Ori: ALY72667.1 Feature: domain Description: LptD Location: 704901-707466 bp Feature: domain Description: LptD Location: 704901 -707466 bp Feature: gene Location: 707613-709325 bp Ori: ALY72666.1 Feature: domain Description: RVT_N Location: 707670-707913 bp Feature: domain Description: RVT_N Location: 707670-70791 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707958-708594 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707958-708594 bp Feature: domain Description: YkfC Location: 708801-708954 bp Feature: domain Description: YkfC Location: 708801 -708954 bp Feature: domain Description: HNH Note: nucleases Location: 709131-709269 bp Feature: domain Description: HNH Note: nucleases Location: 7091 31 -709269 bp Feature: gene Location: 709513-709725 bp Feature: gene Location: 710598-711614 bp Ori: ALY72665.1 Feature: domain Description: COG3178 Location: 710601-711600 bp Feature: domain Description: COG31 78 Location: 71 0601 -71 1 600 bp Feature: gene Location: 1266028-1267254 bp Feature: gene Location: 1267578-1268822 bp Feature: domain Description: KOG0387 Location: 1267602-1267728 bp Feature: domain Description: KOG0387 Location: 1 267602-1 267728 bp Feature: domain Description: SF2_C_SNF Location: 1268286-1268658 bp Feature: domain Description: SF2_C_SNF Location: 1 268286-1 268658 bp Feature: gene Location: 1268904-1270622 bp Ori: ALY72169.1 Feature: domain Description: RVT_N Location: 1268961-1269198 bp Feature: domain Description: RVT_N Location: 1 268961 -1 2691 98 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1269249-1269900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 269249-1 269900 bp Feature: domain Description: GIIM Note: maturase Location: 1269954-1270185 bp Feature: domain Description: GIIM Note: maturase Location: 1 269954-1 2701 85 bp Feature: domain Description: HNHc Note: nucleases Location: 1270419-1270575 bp Feature: domain Description: HNHc Note: nucleases Location: 1 27041 9-1 270575 bp Feature: gene Location: 1271219-1272244 bp Ori: ARH13581.1 Feature: domain Description: DEXHc_Snf Location: 1271411-1271657 bp Feature: domain Description: DEXHc_Snf Location: 1 271 41 1 -1 271 657 bp Feature: gene Location: 1272349-1273800 bp Ori: ALY72168.1 Feature: domain Description: AdoMet_MTases Location: 1272472-1272838 bp Feature: domain Description: AdoMet_MTases Location: 1 272472-1 272838 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), KOG0387 (KOG0387, Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) ), SF2_C_SNF (cd18793), HNHc (smart00507), DEXHc_Snf (cd17919), AdoMet_MTases (cl17173)