myRT

myRT report for GCA_001516385.1_ASM151638v1

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Seq: CP008863.1 Pseudomonas aeruginosa strain M37351, complete genome (6897231 bp)
Overview 1 RT 1: 4228379-4239112 bp 2 RT 2: 4255371-4264194 bp 3 RT 3: 4820847-4826378 bp Neighborhood of RT #1 [4228379, 4239114] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [4255371, 4264223] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #3 [4820847, 4826378] RVT_N RVT-GII GIIM HNHc AdoMet_MTases Feature: gene Location: 4228379-4228714 bp Ori: ALY78948.1 Feature: domain Description: NERD Location: 4228478-4228649 bp Feature: domain Description: NERD Location: 4228478-4228649 bp Feature: gene Location: 4228807-4229928 bp Ori: ALY78949.1 Feature: domain Description: COG3177 Location: 4228825-4229917 bp Feature: domain Description: COG31 77 Location: 4228825-422991 7 bp Feature: gene Location: 4230651-4232336 bp Ori: ALY78950.1 Feature: domain Description: RVT_N Location: 4230708-4230948 bp Feature: domain Description: RVT_N Location: 4230708-4230948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4230996-4231632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4230996-4231 632 bp Feature: domain Description: GIIM Note: maturase Location: 4231686-4231917 bp Feature: domain Description: GIIM Note: maturase Location: 4231 686-4231 91 7 bp Feature: domain Description: HNH Note: nucleases Location: 4232169-4232307 bp Feature: domain Description: HNH Note: nucleases Location: 42321 69-4232307 bp Feature: gene Location: 4233417-4237154 bp Ori: ALY78951.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 4233525-4234182 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 4233525-42341 82 bp Feature: domain Description: PRK09776 Location: 4234395-4234866 bp Feature: domain Description: PRK09776 Location: 4234395-4234866 bp Feature: domain Description: PAS Location: 4234911-4235448 bp Feature: domain Description: PAS Location: 423491 1 -4235448 bp Feature: domain Description: PRK10060 Location: 4235457-4237104 bp Feature: domain Description: PRK1 0060 Location: 4235457-42371 04 bp Feature: gene Location: 4237261-4239114 bp Ori: ALY78952.1 Feature: domain Description: PRK05658 Location: 4237273-4239112 bp Feature: domain Description: PRK05658 Location: 4237273-42391 1 2 bp Feature: gene Location: 4255371-4256663 bp Ori: ALY78970.1 Feature: domain Description: PRK10770 Location: 4255461-4256655 bp Feature: domain Description: PRK1 0770 Location: 4255461 -4256655 bp Feature: gene Location: 4256644-4259418 bp Ori: ALY78971.1 Feature: domain Description: LptD Location: 4256839-4259404 bp Feature: domain Description: LptD Location: 4256839-4259404 bp Feature: gene Location: 4259551-4261263 bp Ori: ALY78972.1 Feature: domain Description: RVT_N Location: 4259608-4259851 bp Feature: domain Description: RVT_N Location: 4259608-4259851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4259896-4260532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4259896-4260532 bp Feature: domain Description: YkfC Location: 4260739-4260892 bp Feature: domain Description: YkfC Location: 4260739-4260892 bp Feature: domain Description: HNH Note: nucleases Location: 4261069-4261207 bp Feature: domain Description: HNH Note: nucleases Location: 4261 069-4261 207 bp Feature: gene Location: 4262536-4263552 bp Ori: ALY78973.1 Feature: domain Description: COG3178 Location: 4262539-4263538 bp Feature: domain Description: COG31 78 Location: 4262539-4263538 bp Feature: gene Location: 4263549-4264223 bp Ori: ALY78974.1 Feature: domain Description: NTP_transferase_like_1 Location: 4263555-4264194 bp Feature: domain Description: NTP_transferase_like_1 Location: 4263555-42641 94 bp Feature: gene Location: 4820847-4822565 bp Ori: ALY79468.1 Feature: domain Description: RVT_N Location: 4820904-4821141 bp Feature: domain Description: RVT_N Location: 4820904-4821 1 41 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4821192-4821843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4821 1 92-4821 843 bp Feature: domain Description: GIIM Note: maturase Location: 4821897-4822128 bp Feature: domain Description: GIIM Note: maturase Location: 4821 897-48221 28 bp Feature: domain Description: HNHc Note: nucleases Location: 4822362-4822518 bp Feature: domain Description: HNHc Note: nucleases Location: 4822362-482251 8 bp Feature: gene Location: 4824292-4825743 bp Ori: ALY79469.1 Feature: domain Description: AdoMet_MTases Location: 4824415-4824781 bp Feature: domain Description: AdoMet_MTases Location: 482441 5-4824781 bp Feature: gene Location: 4825773-4826378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), HNHc (smart00507), AdoMet_MTases (cl17173)