myRT

myRT report for GCA_001518735.1_ASM151873v1

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Seq: CP013995.1 Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence (381524 bp)
Overview 1 RT 1: 263645-270371 bp 2 RT 2: 328365-335093 bp Neighborhood of RT #1 [263645, 270371] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Neighborhood of RT #2 [328365, 335093] Glucosaminidase Peptidase_M23 RVT-GII HNHc VirB4 Feature: gene Location: 263645-264850 bp Ori: ALZ53740.1 Feature: domain Description: Glucosaminidase Location: 263921-264317 bp Feature: domain Description: Glucosaminidase Location: 263921 -26431 7 bp Feature: domain Description: Peptidase_M23 Location: 264494-264731 bp Feature: domain Description: Peptidase_M23 Location: 264494-264731 bp Feature: gene Location: 264850-265329 bp Feature: gene Location: 265357-267234 bp Ori: ALZ53742.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265672-266410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265672-26641 0 bp Feature: domain Description: HNHc Note: nucleases Location: 266968-267121 bp Feature: domain Description: HNHc Note: nucleases Location: 266968-2671 21 bp Feature: gene Location: 267921-269615 bp Ori: ALZ53743.1 Feature: domain Description: VirB4 Location: 268239-268923 bp Feature: domain Description: VirB4 Location: 268239-268923 bp Feature: gene Location: 269778-270371 bp Feature: gene Location: 328365-329570 bp Ori: ALZ53812.1 Feature: domain Description: Glucosaminidase Location: 328641-329037 bp Feature: domain Description: Glucosaminidase Location: 328641 -329037 bp Feature: domain Description: Peptidase_M23 Location: 329214-329451 bp Feature: domain Description: Peptidase_M23 Location: 32921 4-329451 bp Feature: gene Location: 329570-329890 bp Feature: gene Location: 330078-331955 bp Ori: ALZ53814.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330393-331131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 330393-331 1 31 bp Feature: domain Description: HNHc Note: nucleases Location: 331689-331842 bp Feature: domain Description: HNHc Note: nucleases Location: 331 689-331 842 bp Feature: gene Location: 332643-334337 bp Ori: ALZ53815.1 Feature: domain Description: VirB4 Location: 332961-333645 bp Feature: domain Description: VirB4 Location: 332961 -333645 bp Feature: gene Location: 334500-335093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), RVT-GII, HNHc (smart00507), VirB4 (COG3451)

Seq: CP013994.1 Enterococcus faecium strain 6E6, complete genome (2966909 bp)
Overview 1 RT 1: 883870-890510 bp 2 RT 2: 2840288-2845484 bp Neighborhood of RT #1 [883870, 890551] TcpE AAA_10 RVT-GII AAA_10 Transposase_mut Neighborhood of RT #2 [2840288, 2845555] HTH_XRE Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc ArdA TcpE Feature: gene Location: 883870-884259 bp Ori: ALZ51542.1 Feature: domain Description: TcpE Location: 883888-884188 bp Feature: domain Description: TcpE Location: 883888-884188 bp Feature: gene Location: 884246-885793 bp Feature: domain Description: AAA_10 Location: 885575-885758 bp Feature: domain Description: AAA_10 Location: 885575-885758 bp Feature: gene Location: 886493-888319 bp Ori: ALZ51543.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886793-887492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886793-887492 bp Feature: gene Location: 888432-889271 bp Feature: domain Description: AAA_10 Location: 888438-889257 bp Feature: domain Description: AAA_10 Location: 888438-8892 57 bp Feature: gene Location: 889364-890551 bp Ori: ALZ51544.1 Feature: domain Description: Transposase_mut Location: 889367-890510 bp Feature: domain Description: Transposase_mut Location: 889367-890510 bp Feature: gene Location: 2840288-2841472 bp Ori: ALZ53280.1 Feature: domain Description: HTH_XRE Location: 2840318-2840462 bp Feature: domain Description: HTH_XRE Location: 2 840318-2 840462 bp Feature: domain Description: Rol_Rep_N Location: 2840495-2840759 bp Feature: domain Description: Rol_Rep_N Location: 2 840495-2 840759 bp Feature: domain Description: Rep_trans Location: 2840783-2841395 bp Feature: domain Description: Rep_trans Location: 2 840783-2 841395 bp Feature: gene Location: 2841487-2841606 bp Ori: ALZ53281.1 Feature: domain Description: DUF3789 Location: 2841496-2841589 bp Feature: domain Description: DUF3789 Location: 2 841496-2 841589 bp Feature: gene Location: 2842352-2844262 bp Ori: ALZ53282.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2842685-2843423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 842 685-2 84342 3 bp Feature: domain Description: HNHc Note: nucleases Location: 2843978-2844143 bp Feature: domain Description: HNHc Note: nucleases Location: 2 843978-2 844143 bp Feature: gene Location: 2844603-2845106 bp Ori: ALZ53283.1 Feature: domain Description: ArdA Location: 2844621-2845092 bp Feature: domain Description: ArdA Location: 2 84462 1-2 845092 bp Feature: gene Location: 2845166-2845555 bp Ori: ALZ53284.1 Feature: domain Description: TcpE Location: 2845184-2845484 bp Feature: domain Description: TcpE Location: 2 845184-2 845484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcpE (pfam12648), AAA_10 (pfam12846), RVT-GII, Transposase_mut (pfam00872), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), HNHc (smart00507), ArdA (pfam07275)

Seq: CP013996.1 Enterococcus faecium strain 6E6 plasmid unnamed2, complete sequence (49420 bp)
Overview 1 RT 1: 8431-14509 bp Neighborhood of RT #1 [8431, 14532] PinE Tra8 RVT-AbiP2 HsdM RMtype1_S_TRD-CR_like Feature: gene Location: 8431-8994 bp Ori: ALZ53882.1 Feature: domain Description: PinE Location: 8443-8989 bp Feature: domain Description: PinE Location: 8443 -8989 bp Feature: gene Location: 9637-10590 bp Ori: ALZ53883.1 Feature: domain Description: Tra8 Location: 9640-10567 bp Feature: domain Description: Tra8 Location: 9640-10567 bp Feature: gene Location: 10655-12043 bp Ori: ALZ53923.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 10916-11381 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 10916-113 81 bp Feature: gene Location: 12381-14003 bp Ori: ALZ53884.1 Feature: domain Description: HsdM Location: 12402-13929 bp Feature: domain Description: HsdM Location: 12402-13 929 bp Feature: gene Location: 13984-14532 bp Ori: ALZ53885.1 Feature: domain Description: RMtype1_S_TRD-CR_like Location: 14185-14509 bp Feature: domain Description: RMtype1_S_TRD-CR_like Location: 14185-14509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), RMtype1_S_TRD-CR_like (cl38903)