myRT

myRT report for GCA_001518855.1_ASM151885v1

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Seq: CP010830.1 Shigella sonnei strain FORC_011 plasmid pFORC11.1, complete sequence (215551 bp)
Overview 1 RT 1: 22621-27538 bp 2 RT 2: 105198-108977 bp 3 RT 3: 132857-139080 bp 4 RT 4: 145951-147400 bp Neighborhood of RT #1 [22621, 27558] COG4584 RVT-GII RVT-GII GIIM COG3547 sopB_N ParB Neighborhood of RT #2 [105198, 109060] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE HTH_23 HTH_33 DDE_3 Neighborhood of RT #3 [132857, 139082] PRK09409 Tra5 RVT-GII GIIM RVT-GII GIIM ushA PHA02517 Neighborhood of RT #4 [145951, 147400] PHA02517 PHA02517 RVT-GII Feature: gene Location: 22621-23793 bp Ori: ALZ58718.1 Feature: domain Description: COG4584 Location: 22624-23461 bp Feature: domain Description: COG4584 Location: 22624-23461 bp Feature: gene Location: 23859-24023 bp Feature: gene Location: 24317-25006 bp Ori: ALZ58720.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24518-24980 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2451 8-24980 bp Feature: gene Location: 25021-25548 bp Ori: ALZ58721.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25027-25171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25027-251 71 bp Feature: domain Description: GIIM Note: maturase Location: 25249-25471 bp Feature: domain Description: GIIM Note: maturase Location: 25249-25471 bp Feature: gene Location: 25837-26322 bp Ori: ALZ58722.1 Feature: domain Description: COG3547 Location: 25855-26287 bp Feature: domain Description: COG3547 Location: 25855-26287 bp Feature: gene Location: 26578-27558 bp Ori: ALZ58723.1 Feature: domain Description: sopB_N Location: 26755-26950 bp Feature: domain Description: sopB_N Location: 26755-26950 bp Feature: domain Description: ParB Location: 27163-27538 bp Feature: domain Description: ParB Location: 271 63-27538 bp Feature: gene Location: 105198-105419 bp Feature: gene Location: 105695-106411 bp Ori: ALZ58817.1 Feature: domain Description: DDE_Tnp_1 Location: 105701-106343 bp Feature: domain Description: DDE_Tnp_1 Location: 1 05701 -1 06343 bp Feature: gene Location: 106503-106706 bp Ori: ALZ58818.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106611-106701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0661 1 -1 06701 bp Feature: gene Location: 106938-107123 bp Ori: ALZ58819.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106947-107097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 06947-1 07097 bp Feature: gene Location: 107217-107885 bp Ori: ALZ58820.1 Feature: domain Description: HTH_23 Location: 107325-107412 bp Feature: domain Description: HTH_23 Location: 1 07325-1 0741 2 bp Feature: domain Description: InsE Location: 107541-107736 bp Feature: domain Description: InsE Location: 1 07541 -1 07736 bp Feature: gene Location: 108029-109060 bp Ori: ALZ58821.1 Feature: domain Description: HTH_23 Location: 108107-108248 bp Feature: domain Description: HTH_23 Location: 1 081 07-1 08248 bp Feature: domain Description: HTH_33 Location: 108353-108500 bp Feature: domain Description: HTH_33 Location: 1 08353-1 08500 bp Feature: domain Description: DDE_3 Location: 108557-108977 bp Feature: domain Description: DDE_3 Location: 1 08557-1 08977 bp Feature: gene Location: 132857-133762 bp Ori: ALZ58855.1 Feature: domain Description: PRK09409 Location: 132860-133760 bp Feature: domain Description: PRK09409 Location: 1 32860-1 33760 bp Feature: gene Location: 133883-134104 bp Ori: ALZ58856.1 Feature: domain Description: Tra5 Location: 133895-134087 bp Feature: domain Description: Tra5 Location: 1 33895-1 34087 bp Feature: gene Location: 134117-135244 bp Ori: ALZ58857.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134417-135074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3441 7-1 35074 bp Feature: gene Location: 135214-135459 bp Ori: ALZ58858.1 Feature: domain Description: GIIM Note: maturase Location: 135220-135361 bp Feature: domain Description: GIIM Note: maturase Location: 1 35220-1 35361 bp Feature: gene Location: 135543-136070 bp Ori: ALZ58859.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135549-135693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 35549-1 35693 bp Feature: domain Description: GIIM Note: maturase Location: 135777-135993 bp Feature: domain Description: GIIM Note: maturase Location: 1 35777-1 35993 bp Feature: gene Location: 136577-138229 bp Ori: ALZ58860.1 Feature: domain Description: ushA Location: 136589-138227 bp Feature: domain Description: ushA Location: 1 36589-1 38227 bp Feature: gene Location: 138570-139082 bp Ori: ALZ58861.1 Feature: domain Description: PHA02517 Location: 138573-139080 bp Feature: domain Description: PHA0251 7 Location: 1 38573-1 39080 bp Feature: gene Location: 145951-146514 bp Ori: ALZ58867.1 Feature: domain Description: PHA02517 Location: 146011-146317 bp Feature: domain Description: PHA0251 7 Location: 1 4601 1 -1 4631 7 bp Feature: gene Location: 146520-146729 bp Ori: ALZ58868.1 Feature: domain Description: PHA02517 Location: 146613-146685 bp Feature: domain Description: PHA0251 7 Location: 1 4661 3-1 46685 bp Feature: gene Location: 146891-147115 bp Ori: ALZ58869.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146894-147089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 46894-1 47089 bp Feature: gene Location: 147122-147253 bp Feature: gene Location: 147299-147400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), ParB (smart00470), DDE_Tnp_1 (pfam01609), HTH_23 (pfam13384), InsE (COG2963), HTH_33 (pfam13592)
DDE_3 (pfam13358), PRK09409 (IS2 transposase TnpB; Reviewed), Tra5 (COG2801), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed)