myRT

myRT report for GCA_001523745.2_ASM152374v2

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Seq: CP013386.1 Burkholderia sp. BDU6 chromosome 1, complete sequence (3838800 bp)
Overview 1 RT 1: 2081431-2084919 bp 2 RT 2: 2111443-2117714 bp Neighborhood of RT #1 [2081431, 2084951] ComEA YidB RVT-GII GIIM DUF3268 DUF772 IS5 Neighborhood of RT #2 [2111443, 2117785] VacB HTH_1 PBP2_GbpR RVT-GII PRK06526 Feature: gene Location: 2081431-2082012 bp Ori: AOJ02010.1 Feature: domain Description: ComEA Location: 2081464-2081674 bp Feature: domain Description: ComEA Location: 2081 464-2081 674 bp Feature: gene Location: 2082093-2082515 bp Ori: AOJ02011.1 Feature: domain Description: YidB Location: 2082114-2082450 bp Feature: domain Description: YidB Location: 20821 1 4-2082450 bp Feature: gene Location: 2082691-2083245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2082694-2082823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2082694-2082823 bp Feature: domain Description: GIIM Note: maturase Location: 2082883-2083087 bp Feature: domain Description: GIIM Note: maturase Location: 2082883-2083087 bp Feature: gene Location: 2083244-2083534 bp Feature: domain Description: DUF3268 Location: 2083253-2083520 bp Feature: domain Description: DUF3268 Location: 2083253-2083520 bp Feature: gene Location: 2083629-2084951 bp Ori: AOJ02012.1 Feature: domain Description: DUF772 Location: 2083785-2084007 bp Feature: domain Description: DUF772 Location: 2083785-2084007 bp Feature: domain Description: IS5 Location: 2084304-2084919 bp Feature: domain Description: IS5 Location: 2084304-208491 9 bp Feature: gene Location: 2111443-2113869 bp Ori: AOJ03549.1 Feature: domain Description: VacB Location: 2111464-2113657 bp Feature: domain Description: VacB Location: 21 1 1 464-21 1 3657 bp Feature: gene Location: 2115438-2116103 bp Feature: domain Description: HTH_1 Location: 2115447-2115621 bp Feature: domain Description: HTH_1 Location: 21 1 5447-21 1 5621 bp Feature: domain Description: PBP2_GbpR Location: 2115714-2116101 bp Feature: domain Description: PBP2_GbpR Location: 21 1 571 4-21 1 61 01 bp Feature: gene Location: 2116094-2116699 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2116103-2116688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 61 03-21 1 6688 bp Feature: gene Location: 2116800-2117015 bp Feature: gene Location: 2117012-2117785 bp Ori: AOJ02043.1 Feature: domain Description: PRK06526 Location: 2117102-2117714 bp Feature: domain Description: PRK06526 Location: 21 1 71 02-21 1 771 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComEA (COG1555), YidB (COG3753), RVT-GII, GIIM (pfam08388), DUF3268 (pfam11672), DUF772 (pfam05598), IS5 (COG3039), VacB (COG0557), HTH_1 (pfam00126), PBP2_GbpR (cd08435)
PRK06526 (transposase; Provisional)

Seq: CP013387.1 Burkholderia sp. BDU6 chromosome 2, complete sequence (2752114 bp)
Overview 1 RT 1: 5635-10603 bp 2 RT 2: 1222438-1230180 bp 3 RT 3: 2670166-2675987 bp Neighborhood of RT #1 [5635, 10617] XerD DUF2471 RVT-GII COG3293 HipB Cupin_2 Neighborhood of RT #2 [1222438, 1230191] OpgC_C gram_neg_porins RVT-GII HTH_1 PBP2_LTTR_like_1 nlpD Neighborhood of RT #3 [2670166, 2676094] DsbDgamma RVT-GII gram_neg_porins COG3837 Feature: gene Location: 5635-6678 bp Ori: AOJ03690.1 Feature: domain Description: XerD Location: 5755-6559 bp Feature: domain Description: XerD Location: 5755-6559 bp Feature: gene Location: 6835-7206 bp Ori: AOJ03691.1 Feature: domain Description: DUF2471 Location: 6844-7156 bp Feature: domain Description: DUF2 471 Location: 6844-7156 bp Feature: gene Location: 7610-9100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8021-8711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 802 1-8711 bp Feature: gene Location: 9610-9990 bp Ori: AOJ03692.1 Feature: domain Description: COG3293 Location: 9640-9973 bp Feature: domain Description: COG32 93 Location: 9640-9973 bp Feature: gene Location: 10015-10617 bp Ori: AOJ03693.1 Feature: domain Description: HipB Location: 10084-10327 bp Feature: domain Description: HipB Location: 10084-1032 7 bp Feature: domain Description: Cupin_2 Location: 10405-10603 bp Feature: domain Description: Cupin_2 Location: 10405-10603 bp Feature: gene Location: 1222438-1223595 bp Ori: AOJ04528.1 Feature: domain Description: OpgC_C Location: 1222462-1223494 bp Feature: domain Description: OpgC_C Location: 12 2 2 462 -12 2 3494 bp Feature: gene Location: 1224022-1225176 bp Ori: AOJ04529.1 Feature: domain Description: gram_neg_porins Location: 1224088-1225174 bp Feature: domain Description: gram_neg_porins Location: 12 2 4088-12 2 5174 bp Feature: gene Location: 1225536-1227011 bp Ori: AOJ05748.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1225944-1226631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 5944-12 2 6631 bp Feature: gene Location: 1227680-1228591 bp Ori: AOJ04530.1 Feature: domain Description: HTH_1 Location: 1227695-1227872 bp Feature: domain Description: HTH_1 Location: 12 2 7695-12 2 7872 bp Feature: domain Description: PBP2_LTTR_like_1 Location: 1227962-1228553 bp Feature: domain Description: PBP2 _LTTR_like_1 Location: 12 2 7962 -12 2 8553 bp Feature: gene Location: 1229205-1230191 bp Ori: AOJ04531.1 Feature: domain Description: nlpD Location: 1229436-1230180 bp Feature: domain Description: nlpD Location: 12 2 9436-12 30180 bp Feature: gene Location: 2670166-2671734 bp Ori: AOJ05592.1 Feature: domain Description: DsbDgamma Location: 2670301-2670592 bp Feature: domain Description: DsbDgamma Location: 2 670301-2 670592 bp Feature: gene Location: 2672072-2672293 bp Feature: gene Location: 2672379-2673854 bp Ori: AOJ05880.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2672787-2673474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 672 787-2 673474 bp Feature: gene Location: 2674214-2675386 bp Ori: AOJ05594.1 Feature: domain Description: gram_neg_porins Location: 2674292-2675384 bp Feature: domain Description: gram_neg_porins Location: 2 6742 92 -2 675384 bp Feature: gene Location: 2675543-2676094 bp Ori: AOJ05595.1 Feature: domain Description: COG3837 Location: 2675675-2675987 bp Feature: domain Description: COG3837 Location: 2 675675-2 675987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerD (COG4974), DUF2471 (pfam10616), RVT-GII, COG3293 (Transposase ), HipB (COG1396), Cupin_2 (pfam07883), OpgC_C (pfam10129), gram_neg_porins (cd00342), HTH_1 (pfam00126), PBP2_LTTR_like_1 (cd08421)
nlpD (PRK10871), DsbDgamma (cd02953), COG3837 (Uncharacterized conserved protein, cupin superfamily )