myRT

myRT report for GCA_001524445.2_ASM152444v2

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Seq: CP013418.1 Burkholderia sp. MSMB0266 chromosome 2, complete sequence (2824254 bp)
Overview 1 RT 1: 2170747-2176670 bp Neighborhood of RT #1 [2170747, 2176672] XerD DUF2471 RVT_N RVT-GII YkfC HipB Cupin_2 PRK06939 Feature: gene Location: 2170747-2171790 bp Ori: AOJ72606.1 Feature: domain Description: XerD Location: 2170867-2171671 bp Feature: domain Description: XerD Location: 21 70867-21 71 671 bp Feature: gene Location: 2171956-2172336 bp Ori: AOJ72607.1 Feature: domain Description: DUF2471 Location: 2171965-2172274 bp Feature: domain Description: DUF2471 Location: 21 71 965-21 72274 bp Feature: gene Location: 2172521-2174044 bp Ori: AOJ72608.1 Feature: domain Description: RVT_N Location: 2172569-2172812 bp Feature: domain Description: RVT_N Location: 21 72569-21 7281 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2172857-2173523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 72857-21 73523 bp Feature: domain Description: YkfC Location: 2173655-2173838 bp Feature: domain Description: YkfC Location: 21 73655-21 73838 bp Feature: gene Location: 2174692-2175306 bp Ori: AOJ72609.1 Feature: domain Description: HipB Location: 2174761-2175001 bp Feature: domain Description: HipB Location: 21 74761 -21 75001 bp Feature: domain Description: Cupin_2 Location: 2175094-2175280 bp Feature: domain Description: Cupin_2 Location: 21 75094-21 75280 bp Feature: gene Location: 2175473-2176672 bp Ori: AOJ72610.1 Feature: domain Description: PRK06939 Location: 2175479-2176670 bp Feature: domain Description: PRK06939 Location: 21 75479-21 76670 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerD (COG4974), DUF2471 (pfam10616), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HipB (COG1396), Cupin_2 (pfam07883), PRK06939 (2-amino-3-ketobutyrate coenzyme A ligase; Provisional)

Seq: CP013417.1 Burkholderia sp. MSMB0266 chromosome 1, complete sequence (4228278 bp)
Overview 1 RT 1: 802084-804749 bp 2 RT 2: 2586712-2590841 bp 3 RT 3: 3515435-3521218 bp Neighborhood of RT #1 [802084, 804784] InsE PHA02517 RVT-G2L InsE TnpB_IS66 Neighborhood of RT #2 [2586712, 2590841] Avd_like RVT-DGRs PRK06850 Neighborhood of RT #3 [3515435, 3521223] PolY_like COG4544 RVT_N RVT-GII YkfC PhnK Feature: gene Location: 802084-802392 bp Ori: AOJ67967.1 Feature: domain Description: InsE Location: 802087-802360 bp Feature: domain Description: InsE Location: 802 087-802 360 bp Feature: gene Location: 802389-803219 bp Ori: AOJ67968.1 Feature: domain Description: PHA02517 Location: 802485-803205 bp Feature: domain Description: PHA02 517 Location: 802 485-8032 05 bp Feature: gene Location: 803368-803910 bp Ori: AOJ67969.1 Feature: RT Description: RVT-G2L Note: G2L RT Location: 803371-803872 bp Feature: RT Description: RVT-G2 L Note: G2 L RT Location: 803371-803872 bp Feature: gene Location: 803970-804431 bp Ori: AOJ67970.1 Feature: domain Description: InsE Location: 804033-804231 bp Feature: domain Description: InsE Location: 804033-8042 31 bp Feature: gene Location: 804431-804784 bp Ori: AOJ67971.1 Feature: domain Description: TnpB_IS66 Location: 804458-804749 bp Feature: domain Description: TnpB_IS66 Location: 804458-804749 bp Feature: gene Location: 2586712-2587176 bp Feature: gene Location: 2587191-2587568 bp Ori: AOJ69367.1 Feature: domain Description: Avd_like Location: 2587218-2587524 bp Feature: domain Description: Avd_like Location: 2 5872 18-2 58752 4 bp Feature: gene Location: 2587903-2588898 bp Ori: AOJ70874.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2587996-2588683 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 587996-2 588683 bp Feature: gene Location: 2588911-2590146 bp Ori: AOJ70875.1 Feature: domain Description: PRK06850 Location: 2588959-2590021 bp Feature: domain Description: PRK06850 Location: 2 588959-2 59002 1 bp Feature: gene Location: 2590143-2590841 bp Feature: gene Location: 3515435-3516910 bp Ori: AOJ70087.1 Feature: domain Description: PolY_like Location: 3515450-3516443 bp Feature: domain Description: PolY_like Location: 3515450-3516443 bp Feature: gene Location: 3516843-3517553 bp Ori: AOJ70088.1 Feature: domain Description: COG4544 Location: 3516930-3517359 bp Feature: domain Description: COG4544 Location: 3516930-3517359 bp Feature: gene Location: 3517729-3519252 bp Ori: AOJ70089.1 Feature: domain Description: RVT_N Location: 3517777-3518020 bp Feature: domain Description: RVT_N Location: 3517777-351802 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3518065-3518731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3518065-3518731 bp Feature: domain Description: YkfC Location: 3518863-3519046 bp Feature: domain Description: YkfC Location: 3518863-3519046 bp Feature: gene Location: 3519976-3520155 bp Feature: gene Location: 3520429-3521223 bp Ori: AOJ70091.1 Feature: domain Description: PhnK Location: 3520432-3521218 bp Feature: domain Description: PhnK Location: 352 0432 -352 12 18 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-G2L, TnpB_IS66 (pfam05717), Avd_like (cd16376), RVT-DGRs, PRK06850 (hypothetical protein; Provisional), PolY_like (cd03468), COG4544 (Uncharacterized conserved protein ), RVT_N (pfam13655)
RVT-GII, YkfC (COG3344), PhnK (COG4107)