myRT

myRT report for GCA_001544015.1_ASM154401v1

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Seq: AP014924.1 Limnochorda pilosa DNA, complete genome, strain: HC45 (3817036 bp)
Overview 1 RT 1: 434270-441003 bp 2 RT 2: 1650716-1658323 bp 3 RT 3: 2120241-2126082 bp Neighborhood of RT #1 [434270, 441020] UgpE NAGidase RVT-GII GIIM COG5421 SAF_AH_GD Neighborhood of RT #2 [1650716, 1658323] tolB DAP2 MFS_MefA_like RVT-GII COG5421 Neighborhood of RT #3 [2120241, 2126168] UgpE UgpA RVT-GII RVT-GII GIIM PBP2_TMBP_like Thr-synth_1 Feature: gene Location: 434270-435160 bp Ori: BAS26270.1 Feature: domain Description: UgpE Location: 434348-435155 bp Feature: domain Description: UgpE Location: 434348-4351 55 bp Feature: gene Location: 435202-436638 bp Ori: BAS26271.1 Feature: domain Description: NAGidase Location: 435226-436120 bp Feature: domain Description: NAGidase Location: 435226-4361 20 bp Feature: gene Location: 437211-438440 bp Ori: BAS26272.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437466-438147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437466-4381 47 bp Feature: domain Description: GIIM Note: maturase Location: 438216-438432 bp Feature: domain Description: GIIM Note: maturase Location: 43821 6-438432 bp Feature: gene Location: 438834-440546 bp Ori: BAS26273.1 Feature: domain Description: COG5421 Location: 439077-440328 bp Feature: domain Description: COG5421 Location: 439077-440328 bp Feature: gene Location: 440739-441020 bp Ori: BAS26274.1 Feature: domain Description: SAF_AH_GD Location: 440754-441003 bp Feature: domain Description: SAF_AH_GD Location: 440754-441 003 bp Feature: gene Location: 1650716-1652503 bp Ori: BAS27395.1 Feature: domain Description: tolB Location: 1650764-1651088 bp Feature: domain Description: tolB Location: 1 650764-1 651 088 bp Feature: domain Description: DAP2 Location: 1651343-1652495 bp Feature: domain Description: DAP2 Location: 1 651 343-1 652495 bp Feature: gene Location: 1652894-1654060 bp Ori: BAS27396.1 Feature: domain Description: MFS_MefA_like Location: 1652903-1653986 bp Feature: domain Description: MFS_MefA_like Location: 1 652903-1 653986 bp Feature: gene Location: 1654949-1656028 bp Ori: BAS27397.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1654997-1655678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 654997-1 655678 bp Feature: gene Location: 1656366-1658084 bp Ori: BAS27398.1 Feature: domain Description: COG5421 Location: 1656564-1657857 bp Feature: domain Description: COG5421 Location: 1 656564-1 657857 bp Feature: gene Location: 1658141-1658323 bp Feature: gene Location: 2120241-2121065 bp Ori: BAS27849.1 Feature: domain Description: UgpE Location: 2120265-2121060 bp Feature: domain Description: UgpE Location: 21 20265-21 21 060 bp Feature: gene Location: 2121069-2121926 bp Ori: BAS27850.1 Feature: domain Description: UgpA Location: 2121084-2121921 bp Feature: domain Description: UgpA Location: 21 21 084-21 21 921 bp Feature: gene Location: 2122086-2123039 bp Ori: BAS27851.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2122269-2122422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 22269-21 22422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2122425-2122593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 22425-21 22593 bp Feature: domain Description: GIIM Note: maturase Location: 2122644-2122866 bp Feature: domain Description: GIIM Note: maturase Location: 21 22644-21 22866 bp Feature: gene Location: 2123652-2124887 bp Ori: BAS27852.1 Feature: domain Description: PBP2_TMBP_like Location: 2123754-2124864 bp Feature: domain Description: PBP2_TMBP_like Location: 21 23754-21 24864 bp Feature: gene Location: 2124960-2126168 bp Ori: BAS27853.1 Feature: domain Description: Thr-synth_1 Location: 2125104-2126082 bp Feature: domain Description: Thr-synth_1 Location: 21 251 04-21 26082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UgpE (COG0395), NAGidase (pfam07555), RVT-GII, GIIM (pfam08388), COG5421 (Transposase ), SAF_AH_GD (cd11613), tolB (PRK05137), DAP2 (COG1506), MFS_MefA_like (cd06173), UgpA (COG1175)
PBP2_TMBP_like (cd13585), Thr-synth_1 (cd01563)