myRT

myRT report for GCA_001548095.1_Gm3709_assembly_1.0

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Seq: AP014815.1 Geminocystis sp. NIES-3708 DNA, complete genome (3883409 bp)
Overview 1 RT 1: 148950-151961 bp 2 RT 2: 993125-999114 bp 3 RT 3: 2005311-2011980 bp 4 RT 4: 2266530-2272325 bp Neighborhood of RT #1 [148950, 151961] RVT-UG7 YchJ Neighborhood of RT #2 [993125, 999114] COG3597 SHOCT RVT_N RVT-GII GIIM HNH Neighborhood of RT #3 [2005311, 2011982] RVT_N RVT-GII GIIM HNH GumC BY-kinase UreH Neighborhood of RT #4 [2266530, 2272325] COG4639 WYL RVT-Retrons DDE_Tnp_1_3 Feature: gene Location: 148950-149138 bp Feature: gene Location: 149138-149383 bp Feature: gene Location: 149415-150998 bp Ori: BAQ59719.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 149820-150225 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1 49820-1 50225 bp Feature: gene Location: 151211-151711 bp Ori: BAQ59720.1 Feature: domain Description: YchJ Location: 151244-151703 bp Feature: domain Description: YchJ Location: 1 51 244-1 51 703 bp Feature: gene Location: 151731-151961 bp Feature: gene Location: 993125-994228 bp Feature: gene Location: 994555-995115 bp Ori: BAQ60479.1 Feature: domain Description: COG3597 Location: 994576-994903 bp Feature: domain Description: COG3597 Location: 994576-994903 bp Feature: domain Description: SHOCT Location: 995026-995104 bp Feature: domain Description: SHOCT Location: 995026-9951 04 bp Feature: gene Location: 995877-997673 bp Ori: BAQ60480.1 Feature: domain Description: RVT_N Location: 995916-996162 bp Feature: domain Description: RVT_N Location: 99591 6-9961 62 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 996204-996870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 996204-996870 bp Feature: domain Description: GIIM Note: maturase Location: 996972-997203 bp Feature: domain Description: GIIM Note: maturase Location: 996972-997203 bp Feature: domain Description: HNH Note: nucleases Location: 997422-997560 bp Feature: domain Description: HNH Note: nucleases Location: 997422-997560 bp Feature: gene Location: 997894-998397 bp Feature: gene Location: 998449-999114 bp Feature: gene Location: 2005311-2005478 bp Feature: gene Location: 2006023-2006283 bp Feature: gene Location: 2006383-2008179 bp Ori: BAQ61429.1 Feature: domain Description: RVT_N Location: 2006422-2006668 bp Feature: domain Description: RVT_N Location: 2006422-2006668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2006710-2007376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 200671 0-2007376 bp Feature: domain Description: GIIM Note: maturase Location: 2007478-2007709 bp Feature: domain Description: GIIM Note: maturase Location: 2007478-2007709 bp Feature: domain Description: HNH Note: nucleases Location: 2007928-2008066 bp Feature: domain Description: HNH Note: nucleases Location: 2007928-2008066 bp Feature: gene Location: 2008802-2010874 bp Ori: BAQ61430.1 Feature: domain Description: GumC Location: 2008817-2010131 bp Feature: domain Description: GumC Location: 200881 7-201 01 31 bp Feature: domain Description: BY-kinase Location: 2010311-2010866 bp Feature: domain Description: BY-kinase Location: 201 031 1 -201 0866 bp Feature: gene Location: 2011149-2011982 bp Ori: BAQ61431.1 Feature: domain Description: UreH Location: 2011161-2011980 bp Feature: domain Description: UreH Location: 201 1 1 61 -201 1 980 bp Feature: gene Location: 2266530-2268584 bp Ori: BAQ61672.1 Feature: domain Description: COG4639 Location: 2266551-2266983 bp Feature: domain Description: COG4639 Location: 2266551 -2266983 bp Feature: domain Description: WYL Location: 2267874-2268573 bp Feature: domain Description: WYL Location: 2267874-2268573 bp Feature: gene Location: 2268597-2269496 bp Feature: gene Location: 2269525-2270637 bp Ori: BAQ61674.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2269741-2270347 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2269741 -2270347 bp Feature: gene Location: 2271109-2271852 bp Ori: BAQ61675.1 Feature: domain Description: DDE_Tnp_1_3 Location: 2271424-2271850 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 2271 424-2271 850 bp Feature: gene Location: 2272092-2272325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, YchJ (COG3012), COG3597 (Uncharacterized conserved protein, DUF697 family ), SHOCT (pfam09851), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), GumC (COG3206), BY-kinase (cd05387)
UreH (COG0829), COG4639 (Predicted kinase ), WYL (pfam13280), RVT-Retrons, DDE_Tnp_1_3 (pfam13612)

Seq: AP014816.1 Geminocystis sp. NIES-3708 plasmid pGM01 DNA, complete genome (60790 bp)
Overview 1 RT 1: 56114-60626 bp Neighborhood of RT #1 [56114, 60736] DUF4158 RVT_N RVT-GII HNH InsB InsA Feature: gene Location: 56114-56488 bp Ori: BAQ63153.1 Feature: domain Description: DUF4158 Location: 56126-56459 bp Feature: domain Description: DUF4158 Location: 5612 6-56459 bp Feature: gene Location: 56713-57915 bp Feature: gene Location: 58101-59459 bp Ori: BAQ63155.1 Feature: domain Description: RVT_N Location: 58140-58386 bp Feature: domain Description: RVT_N Location: 58140-58386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58428-59070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5842 8-59070 bp Feature: domain Description: HNH Note: nucleases Location: 59271-59397 bp Feature: domain Description: HNH Note: nucleases Location: 592 71-59397 bp Feature: gene Location: 59958-60353 bp Ori: BAQ63156.1 Feature: domain Description: InsB Location: 59964-60228 bp Feature: domain Description: InsB Location: 59964-602 2 8 bp Feature: gene Location: 60374-60736 bp Ori: BAQ63157.1 Feature: domain Description: InsA Location: 60377-60626 bp Feature: domain Description: InsA Location: 60377-6062 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4158 (pfam13700), RVT_N (pfam13655), RVT-GII, HNH (pfam01844), InsB (COG1662), InsA (COG3677)