myRT

myRT report for GCA_001548115.1_Gm3709_assembly_1.0

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Seq: AP014824.1 Geminocystis sp. NIES-3709 plasmid pGM3709_03 DNA, complete genome (49712 bp)
Overview 1 RT 1: 75-11529 bp Neighborhood of RT #1 [75, 11540] COG2931 COG2931 HemolysinCabind COG2931 AE_Prim_S_like RVT-Retrons COG4639 WYL Feature: gene Location: 75-4079 bp Ori: BAQ66976.1 Feature: domain Description: COG2931 Location: 1299-2298 bp Feature: domain Description: COG2931 Location: 1 299-2298 bp Feature: domain Description: COG2931 Location: 2310-2892 bp Feature: domain Description: COG2931 Location: 231 0-2892 bp Feature: domain Description: HemolysinCabind Location: 3009-3111 bp Feature: domain Description: HemolysinCabind Location: 3009-31 1 1 bp Feature: domain Description: COG2931 Location: 3147-4059 bp Feature: domain Description: COG2931 Location: 31 47-4059 bp Feature: gene Location: 4084-6576 bp Ori: BAQ66977.1 Feature: domain Description: AE_Prim_S_like Location: 4270-4606 bp Feature: domain Description: AE_Prim_S_like Location: 4270-4606 bp Feature: gene Location: 7500-8633 bp Ori: BAQ66978.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7716-8346 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 771 6-8346 bp Feature: gene Location: 8674-9462 bp Feature: gene Location: 9489-11540 bp Ori: BAQ66980.1 Feature: domain Description: COG4639 Location: 9510-9942 bp Feature: domain Description: COG4639 Location: 951 0-9942 bp Feature: domain Description: WYL Location: 10836-11529 bp Feature: domain Description: WYL Location: 1 0836-1 1 529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2931 (Ca2+-binding protein, RTX toxin-related ), HemolysinCabind (pfam00353), AE_Prim_S_like (cl01287), RVT-Retrons, COG4639 (Predicted kinase ), WYL (pfam13280)

Seq: AP014821.1 Geminocystis sp. NIES-3709 DNA, complete genome (4150181 bp)
Overview 1 RT 1: 75140-81727 bp Neighborhood of RT #1 [75140, 81909] PRK09040 OmpA_C-like HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind HemolysinCabind Big_9 RVT-GII GIIM McrA DDE_5 DDE_Tnp_1 Feature: gene Location: 75140-75817 bp Ori: BAQ63282.1 Feature: domain Description: PRK09040 Location: 75224-75353 bp Feature: domain Description: PRK09040 Location: 752 2 4-75353 bp Feature: domain Description: OmpA_C-like Location: 75386-75794 bp Feature: domain Description: OmpA_C-like Location: 75386-75794 bp Feature: gene Location: 76214-79300 bp Ori: BAQ63283.1 Feature: domain Description: HemolysinCabind Location: 77507-77609 bp Feature: domain Description: HemolysinCabind Location: 77507-77609 bp Feature: domain Description: HemolysinCabind Location: 77612-77717 bp Feature: domain Description: HemolysinCabind Location: 77612 -77717 bp Feature: domain Description: HemolysinCabind Location: 77720-77825 bp Feature: domain Description: HemolysinCabind Location: 7772 0-7782 5 bp Feature: domain Description: HemolysinCabind Location: 77831-77933 bp Feature: domain Description: HemolysinCabind Location: 77831-77933 bp Feature: domain Description: HemolysinCabind Location: 77942-78041 bp Feature: domain Description: HemolysinCabind Location: 77942 -78041 bp Feature: domain Description: HemolysinCabind Location: 78074-78176 bp Feature: domain Description: HemolysinCabind Location: 78074-78176 bp Feature: domain Description: Big_9 Location: 78551-78800 bp Feature: domain Description: Big_9 Location: 78551-78800 bp Feature: gene Location: 79613-80593 bp Ori: BAQ63284.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79619-80003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 79619-80003 bp Feature: domain Description: GIIM Note: maturase Location: 80063-80183 bp Feature: domain Description: GIIM Note: maturase Location: 80063-80183 bp Feature: domain Description: McrA Location: 80234-80576 bp Feature: domain Description: McrA Location: 802 34-80576 bp Feature: gene Location: 80643-81065 bp Ori: BAQ63285.1 Feature: domain Description: DDE_5 Location: 80706-81042 bp Feature: domain Description: DDE_5 Location: 80706-81042 bp Feature: gene Location: 81031-81909 bp Ori: BAQ63286.1 Feature: domain Description: DDE_Tnp_1 Location: 81199-81727 bp Feature: domain Description: DDE_Tnp_1 Location: 81199-8172 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09040 (hypothetical protein; Provisional), OmpA_C-like (cl30079), HemolysinCabind (pfam00353), Big_9 (pfam17963), RVT-GII, GIIM (pfam08388), McrA (COG4058), DDE_5 (pfam13546), DDE_Tnp_1 (pfam01609)