myRT

myRT report for GCA_001548355.1_ASM154835v1

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Seq: AP014952.1 Klebsiella oxytoca plasmid pKO_JKo3_1 DNA, complete genome, strain: JKo3 (209081 bp)
Overview 1 RT 1: 7309-12652 bp 2 RT 2: 203639-208010 bp Neighborhood of RT #1 [7309, 12789] umuC PRK10276 RVT-GII StbA Plasmid_stab_B Plasmid_stab_B Neighborhood of RT #2 [203639, 208126] InsE RVT-GII GIIM COG3547 Feature: gene Location: 7309-8580 bp Ori: BAS43645.1 Feature: domain Description: umuC Location: 7312-8575 bp Feature: domain Description: umuC Location: 731 2-8575 bp Feature: gene Location: 8580-9005 bp Ori: BAS43646.1 Feature: domain Description: PRK10276 Location: 8583-8991 bp Feature: domain Description: PRK1 0276 Location: 8583-8991 bp Feature: gene Location: 9408-10895 bp Ori: BAS43647.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9813-10503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981 3-1 0503 bp Feature: gene Location: 11144-12115 bp Ori: BAS43648.1 Feature: domain Description: StbA Location: 11147-12092 bp Feature: domain Description: StbA Location: 1 1 1 47-1 2092 bp Feature: gene Location: 12118-12789 bp Ori: BAS43649.1 Feature: domain Description: Plasmid_stab_B Location: 12133-12340 bp Feature: domain Description: Plasmid_stab_B Location: 1 21 33-1 2340 bp Feature: domain Description: Plasmid_stab_B Location: 12445-12652 bp Feature: domain Description: Plasmid_stab_B Location: 1 2445-1 2652 bp Feature: gene Location: 203639-203941 bp Ori: BAS43871.1 Feature: domain Description: InsE Location: 203648-203930 bp Feature: domain Description: InsE Location: 203648-203930 bp Feature: gene Location: 204061-204354 bp Feature: gene Location: 204985-206508 bp Ori: BAS43873.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205258-205990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205258-205990 bp Feature: domain Description: GIIM Note: maturase Location: 206065-206263 bp Feature: domain Description: GIIM Note: maturase Location: 206065-206263 bp Feature: gene Location: 207050-208126 bp Ori: BAS43874.1 Feature: domain Description: COG3547 Location: 207089-208010 bp Feature: domain Description: COG3547 Location: 207089-20801 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784), InsE (COG2963), GIIM (pfam08388), COG3547 (Transposase )

Seq: AP014951.1 Klebsiella oxytoca DNA, complete genome, strain: JKo3 (5944658 bp)
Overview 1 RT 1: 599198-604003 bp 2 RT 2: 1213065-1217524 bp Neighborhood of RT #1 [599198, 604014] PHA02517 COG3547 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #2 [1213065, 1217811] CooC_C RVT-GII GIIM FimC Feature: gene Location: 599198-599434 bp Ori: BAS38556.1 Feature: domain Description: PHA02517 Location: 599222-599414 bp Feature: domain Description: PHA02 517 Location: 5992 2 2 -599414 bp Feature: gene Location: 599527-600603 bp Ori: BAS38557.1 Feature: domain Description: COG3547 Location: 599566-600487 bp Feature: domain Description: COG3547 Location: 599566-600487 bp Feature: gene Location: 601145-602668 bp Ori: BAS38558.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601418-602150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 601418-602 150 bp Feature: domain Description: GIIM Note: maturase Location: 602225-602423 bp Feature: domain Description: GIIM Note: maturase Location: 602 2 2 5-602 42 3 bp Feature: gene Location: 603260-603499 bp Ori: BAS38559.1 Feature: domain Description: PHA02517 Location: 603263-603434 bp Feature: domain Description: PHA02 517 Location: 6032 63-603434 bp Feature: gene Location: 603712-604014 bp Ori: BAS38560.1 Feature: domain Description: InsE Location: 603721-604003 bp Feature: domain Description: InsE Location: 60372 1-604003 bp Feature: gene Location: 1213065-1213235 bp Ori: BAS39123.1 Feature: domain Description: CooC_C Location: 1213068-1213182 bp Feature: domain Description: CooC_C Location: 12 13068-12 13182 bp Feature: gene Location: 1213225-1213842 bp Feature: gene Location: 1213932-1215455 bp Ori: BAS39125.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1214205-1214937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 142 05-12 14937 bp Feature: domain Description: GIIM Note: maturase Location: 1215012-1215210 bp Feature: domain Description: GIIM Note: maturase Location: 12 15012 -12 152 10 bp Feature: gene Location: 1216086-1217138 bp Feature: gene Location: 1217107-1217811 bp Ori: BAS39127.1 Feature: domain Description: FimC Location: 1217149-1217524 bp Feature: domain Description: FimC Location: 12 17149-12 1752 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), InsE (COG2963), CooC_C (pfam15976), FimC (COG3121)