myRT

myRT report for GCA_001549695.1_ASM154969v1

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Seq: AP014659.1 Bradyrhizobium diazoefficiens plasmid pNK6a DNA, complete sequence, strain: NK6 (212255 bp)
Overview 1 RT 1: 198219-200762 bp Neighborhood of RT #1 [198219, 200785] rve_3 RVT-GII COG3547 recD_rel Feature: gene Location: 198219-198386 bp Feature: gene Location: 198533-198655 bp Ori: BAP82109.1 Feature: domain Description: rve_3 Location: 198542-198647 bp Feature: domain Description: rve_3 Location: 1 98542-1 98647 bp Feature: gene Location: 198873-199229 bp Ori: BAP82110.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 199008-199200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 99008-1 99200 bp Feature: gene Location: 199339-200451 bp Ori: BAP82111.1 Feature: domain Description: COG3547 Location: 199360-200344 bp Feature: domain Description: COG3547 Location: 1 99360-200344 bp Feature: gene Location: 200534-200785 bp Ori: BAP82112.1 Feature: domain Description: recD_rel Location: 200540-200762 bp Feature: domain Description: recD_rel Location: 200540-200762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-GII, COG3547 (Transposase ), recD_rel (TIGR01448)

Seq: AP014686.1 Bradyrhizobium diazoefficiens plasmid pNK6b DNA, complete genome, strain: NK6 (210438 bp)
Overview 1 RT 1: 108756-117689 bp Neighborhood of RT #1 [108756, 117763] PinE Zn_ribbon_recom LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM RVT-GII DDE_Tnp_IS66 IstB_IS21 Feature: gene Location: 108756-110843 bp Ori: BAR63319.1 Feature: domain Description: PinE Location: 108795-109437 bp Feature: domain Description: PinE Location: 108795-109437 bp Feature: domain Description: Zn_ribbon_recom Location: 109737-109893 bp Feature: domain Description: Zn_ribbon_recom Location: 109737-109893 bp Feature: gene Location: 111351-112469 bp Ori: BAR63320.1 Feature: domain Description: LZ_Tnp_IS66 Location: 111528-111750 bp Feature: domain Description: LZ_Tnp_IS66 Location: 11152 8-111750 bp Feature: domain Description: zf-IS66 Location: 111777-111897 bp Feature: domain Description: zf-IS66 Location: 111777-111897 bp Feature: domain Description: DDE_Tnp_IS66 Location: 111951-112395 bp Feature: domain Description: DDE_Tnp_IS66 Location: 111951-112 395 bp Feature: gene Location: 112598-113977 bp Ori: BAR63321.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112961-113600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 112 961-113600 bp Feature: domain Description: GIIM Note: maturase Location: 113675-113894 bp Feature: domain Description: GIIM Note: maturase Location: 113675-113894 bp Feature: gene Location: 114460-115701 bp Ori: BAR63322.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114661-115345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114661-115345 bp Feature: gene Location: 116614-116991 bp Ori: BAR63323.1 Feature: domain Description: DDE_Tnp_IS66 Location: 116617-116779 bp Feature: domain Description: DDE_Tnp_IS66 Location: 116617-116779 bp Feature: gene Location: 116996-117763 bp Ori: BAR63324.1 Feature: domain Description: IstB_IS21 Location: 117161-117689 bp Feature: domain Description: IstB_IS2 1 Location: 117161-117689 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), IstB_IS21 (pfam01695)

Seq: AP014685.1 Bradyrhizobium diazoefficiens DNA, complete genome, strain: NK6 (9780023 bp)
Overview 1 RT 1: 1119286-1125705 bp 2 RT 2: 1799713-1804004 bp 3 RT 3: 2252895-2260242 bp 4 RT 4: 2390586-2393429 bp 5 RT 5: 2457501-2462105 bp 6 RT 6: 2531277-2537680 bp 7 RT 7: 2800594-2805096 bp 8 RT 8: 3001078-3008401 bp 9 RT 9: 4042411-4049211 bp 10 RT 10: 5358362-5362116 bp 11 RT 11: 5364380-5369235 bp 12 RT 12: 8761208-8765221 bp 13 RT 13: 9155269-9160209 bp Neighborhood of RT #1 [1119286, 1125920] RVT-GII CitB CitB Neighborhood of RT #2 [1799713, 1804004] DUF3309 PRK14104 RVT-GII Neighborhood of RT #3 [2252895, 2260355] HTH_32 DDE_3 RVT-GII DDE_5 RVT-GII HTH_32 DDE_3 Neighborhood of RT #4 [2390586, 2393464] RVT-GII GIIM HTH_Tnp_1 InsE TnpB_IS66 Neighborhood of RT #5 [2457501, 2462152] DDE_Tnp_1_2 DUF4096 RVT-GII COG3547 Neighborhood of RT #6 [2531277, 2537793] RVT-GII HTH_32 DDE_3 HTH_32 DDE_3 Neighborhood of RT #7 [2800594, 2805164] COG5659 RVT-GII PHA02517 InsE Neighborhood of RT #8 [3001078, 3008499] COG3547 DDE_Tnp_1_4 RVT-Retrons CAP_ED HTH_Crp_2 PHA02517 Neighborhood of RT #9 [4042411, 4050212] MhpC DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Zn_ribbon_recom Neighborhood of RT #10 [5358362, 5362211] RVT-GII TnpB_IS66 Neighborhood of RT #11 [5364380, 5369285] InsE PHA02517 RVT-GII COG3666 DDE_Tnp_1_6 Neighborhood of RT #12 [8761208, 8765221] DDE_Tnp_IS66 RVT-GII RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #13 [9155269, 9160226] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66_C SAPR Feature: gene Location: 1119286-1119861 bp Feature: gene Location: 1120289-1120426 bp Feature: gene Location: 1121315-1122667 bp Ori: BAR54353.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1121516-1122200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1121516-1122200 bp Feature: gene Location: 1123625-1124269 bp Ori: BAR54354.1 Feature: domain Description: CitB Location: 1123631-1124204 bp Feature: domain Description: CitB Location: 1123 63 1-1124204 bp Feature: gene Location: 1125021-1125920 bp Ori: BAR54355.1 Feature: domain Description: CitB Location: 1125051-1125705 bp Feature: domain Description: CitB Location: 1125051-1125705 bp Feature: gene Location: 1799713-1799877 bp Ori: BAR55015.1 Feature: domain Description: DUF3309 Location: 1799725-1799875 bp Feature: domain Description: DUF3 3 09 Location: 1799725-1799875 bp Feature: gene Location: 1800488-1801189 bp Ori: BAR55016.1 Feature: domain Description: PRK14104 Location: 1800503-1801187 bp Feature: domain Description: PRK14104 Location: 1800503 -1801187 bp Feature: gene Location: 1801432-1802778 bp Ori: BAR55017.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1801714-1802401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1801714-1802401 bp Feature: gene Location: 1803141-1803278 bp Feature: gene Location: 1803756-1804004 bp Feature: gene Location: 2252895-2253959 bp Ori: BAR55463.1 Feature: domain Description: HTH_32 Location: 2253078-2253291 bp Feature: domain Description: HTH_3 2 Location: 2253 078-2253 291 bp Feature: domain Description: DDE_3 Location: 2253414-2253846 bp Feature: domain Description: DDE_3 Location: 2253 414-2253 846 bp Feature: gene Location: 2254008-2254145 bp Feature: gene Location: 2254505-2255854 bp Ori: BAR55465.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2254787-2255477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2254787-2255477 bp Feature: gene Location: 2256013-2256372 bp Ori: BAR55466.1 Feature: domain Description: DDE_5 Location: 2256055-2256337 bp Feature: domain Description: DDE_5 Location: 2256055-22563 3 7 bp Feature: gene Location: 2257429-2258778 bp Ori: BAR55467.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2257711-2258401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2257711-2258401 bp Feature: gene Location: 2259138-2259275 bp Feature: gene Location: 2259291-2260355 bp Ori: BAR55469.1 Feature: domain Description: HTH_32 Location: 2259474-2259687 bp Feature: domain Description: HTH_3 2 Location: 2259474-2259687 bp Feature: domain Description: DDE_3 Location: 2259810-2260242 bp Feature: domain Description: DDE_3 Location: 2259810-2260242 bp Feature: gene Location: 2390586-2391881 bp Ori: BAR55615.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2390844-2391495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 90844-23 91495 bp Feature: domain Description: GIIM Note: maturase Location: 2391576-2391801 bp Feature: domain Description: GIIM Note: maturase Location: 23 91576-23 91801 bp Feature: gene Location: 2392058-2392273 bp Ori: BAR55616.1 Feature: domain Description: HTH_Tnp_1 Location: 2392064-2392253 bp Feature: domain Description: HTH_Tnp_1 Location: 23 92064-23 92253 bp Feature: gene Location: 2392691-2393464 bp Ori: BAR55617.1 Feature: domain Description: InsE Location: 2392748-2392958 bp Feature: domain Description: InsE Location: 23 92748-23 92958 bp Feature: domain Description: TnpB_IS66 Location: 2393138-2393429 bp Feature: domain Description: TnpB_IS66 Location: 23 93 13 8-23 93 429 bp Feature: gene Location: 2457501-2457887 bp Ori: BAR55670.1 Feature: domain Description: DDE_Tnp_1_2 Location: 2457636-2457879 bp Feature: domain Description: DDE_Tnp_1_2 Location: 245763 6-2457879 bp Feature: gene Location: 2457884-2458252 bp Ori: BAR55671.1 Feature: domain Description: DUF4096 Location: 2457902-2458121 bp Feature: domain Description: DUF4096 Location: 2457902-2458121 bp Feature: gene Location: 2458391-2459866 bp Ori: BAR55672.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2458799-2459489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2458799-2459489 bp Feature: gene Location: 2460101-2460238 bp Feature: gene Location: 2461124-2462152 bp Ori: BAR55674.1 Feature: domain Description: COG3547 Location: 2461142-2462105 bp Feature: domain Description: COG3 547 Location: 2461142-2462105 bp Feature: gene Location: 2531277-2531381 bp Feature: gene Location: 2531340-2533544 bp Feature: gene Location: 2534707-2534856 bp Ori: BAR55727.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2534710-2534812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 253 4710-253 4812 bp Feature: gene Location: 2535497-2536561 bp Ori: BAR55728.1 Feature: domain Description: HTH_32 Location: 2535680-2535893 bp Feature: domain Description: HTH_3 2 Location: 253 5680-253 5893 bp Feature: domain Description: DDE_3 Location: 2536016-2536448 bp Feature: domain Description: DDE_3 Location: 253 6016-253 6448 bp Feature: gene Location: 2536729-2537793 bp Ori: BAR55729.1 Feature: domain Description: HTH_32 Location: 2536912-2537125 bp Feature: domain Description: HTH_3 2 Location: 253 6912-253 7125 bp Feature: domain Description: DDE_3 Location: 2537248-2537680 bp Feature: domain Description: DDE_3 Location: 253 7248-253 7680 bp Feature: gene Location: 2800594-2800860 bp Feature: gene Location: 2801775-2802128 bp Ori: BAR55989.1 Feature: domain Description: COG5659 Location: 2801871-2802003 bp Feature: domain Description: COG5659 Location: 2801871-2802003 bp Feature: gene Location: 2802226-2803575 bp Ori: BAR55990.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2802508-2803198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2802508-2803 198 bp Feature: gene Location: 2803948-2804850 bp Ori: BAR55991.1 Feature: domain Description: PHA02517 Location: 2804050-2804752 bp Feature: domain Description: PHA02517 Location: 2804050-2804752 bp Feature: gene Location: 2804871-2805164 bp Ori: BAR55992.1 Feature: domain Description: InsE Location: 2804877-2805096 bp Feature: domain Description: InsE Location: 2804877-2805096 bp Feature: gene Location: 3001078-3001869 bp Ori: BAR56203.1 Feature: domain Description: COG3547 Location: 3001099-3001813 bp Feature: domain Description: COG3 547 Location: 3 001099-3 001813 bp Feature: gene Location: 3002228-3003469 bp Ori: BAR56204.1 Feature: domain Description: DDE_Tnp_1_4 Location: 3002231-3003437 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3 00223 1-3 003 43 7 bp Feature: gene Location: 3003627-3005351 bp Ori: BAR56205.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3003660-3003939 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 003 660-3 003 93 9 bp Feature: domain Description: CAP_ED Location: 3004692-3004989 bp Feature: domain Description: CAP_ED Location: 3 004692-3 004989 bp Feature: domain Description: HTH_Crp_2 Location: 3005070-3005268 bp Feature: domain Description: HTH_Crp_2 Location: 3 005070-3 005268 bp Feature: gene Location: 3006460-3006600 bp Feature: gene Location: 3007714-3008499 bp Ori: BAR56207.1 Feature: domain Description: PHA02517 Location: 3007753-3008401 bp Feature: domain Description: PHA02517 Location: 3 007753 -3 008401 bp Feature: gene Location: 4042411-4043274 bp Ori: BAR57268.1 Feature: domain Description: MhpC Location: 4042420-4043257 bp Feature: domain Description: MhpC Location: 4042420-4043 257 bp Feature: gene Location: 4043928-4044248 bp Ori: BAR57269.1 Feature: domain Description: DDE_Tnp_IS66 Location: 4043931-4044093 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4043 93 1-4044093 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4044114-4044228 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4044114-4044228 bp Feature: gene Location: 4045161-4046402 bp Ori: BAR57270.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4045362-4046046 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40453 62-4046046 bp Feature: gene Location: 4046410-4047567 bp Ori: BAR57271.1 Feature: domain Description: LZ_Tnp_IS66 Location: 4046587-4046809 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4046587-4046809 bp Feature: domain Description: zf-IS66 Location: 4046836-4046956 bp Feature: domain Description: zf-IS66 Location: 404683 6-4046956 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4047010-4047454 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4047010-4047454 bp Feature: gene Location: 4048767-4050212 bp Ori: BAR57272.1 Feature: domain Description: Zn_ribbon_recom Location: 4049055-4049211 bp Feature: domain Description: Zn_ribbon_recom Location: 4049055-4049211 bp Feature: gene Location: 5358362-5358499 bp Feature: gene Location: 5358734-5360209 bp Ori: BAR58606.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5359142-5359832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 59142-53 5983 2 bp Feature: gene Location: 5361664-5361840 bp Feature: gene Location: 5361837-5362211 bp Ori: BAR58608.1 Feature: domain Description: TnpB_IS66 Location: 5361864-5362116 bp Feature: domain Description: TnpB_IS66 Location: 53 61864-53 62116 bp Feature: gene Location: 5364380-5364739 bp Ori: BAR58610.1 Feature: domain Description: InsE Location: 5364437-5364710 bp Feature: domain Description: InsE Location: 53 6443 7-53 64710 bp Feature: gene Location: 5364736-5365563 bp Ori: BAR58611.1 Feature: domain Description: PHA02517 Location: 5364838-5365528 bp Feature: domain Description: PHA02517 Location: 53 6483 8-53 65528 bp Feature: gene Location: 5365715-5367190 bp Ori: BAR58612.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5366123-5366813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 66123 -53 66813 bp Feature: gene Location: 5367190-5367291 bp Feature: gene Location: 5367840-5369285 bp Ori: BAR58614.1 Feature: domain Description: COG3666 Location: 5367852-5368323 bp Feature: domain Description: COG3 666 Location: 53 67852-53 683 23 bp Feature: domain Description: DDE_Tnp_1_6 Location: 5368887-5369235 bp Feature: domain Description: DDE_Tnp_1_6 Location: 53 68887-53 6923 5 bp Feature: gene Location: 8761208-8761951 bp Feature: gene Location: 8761977-8762507 bp Ori: BAR62099.1 Feature: domain Description: DDE_Tnp_IS66 Location: 8761980-8762397 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8761980-87623 97 bp Feature: gene Location: 8762515-8763174 bp Ori: BAR62100.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8762518-8762818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8762518-8762818 bp Feature: gene Location: 8763171-8763755 bp Ori: BAR62101.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8763372-8763747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8763 3 72-8763 747 bp Feature: gene Location: 8764668-8764988 bp Ori: BAR62102.1 Feature: domain Description: DDE_Tnp_IS66 Location: 8764671-8764833 bp Feature: domain Description: DDE_Tnp_IS66 Location: 8764671-876483 3 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8764854-8764968 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8764854-8764968 bp Feature: gene Location: 8765123-8765221 bp Feature: gene Location: 9155269-9156426 bp Ori: BAR62502.1 Feature: domain Description: LZ_Tnp_IS66 Location: 9155446-9155668 bp Feature: domain Description: LZ_Tnp_IS66 Location: 9155446-9155668 bp Feature: domain Description: zf-IS66 Location: 9155695-9155815 bp Feature: domain Description: zf-IS66 Location: 9155695-9155815 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9155869-9156313 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9155869-91563 13 bp Feature: gene Location: 9156434-9156640 bp Feature: gene Location: 9157044-9157676 bp Ori: BAR62504.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9157245-9157590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9157245-9157590 bp Feature: gene Location: 9158589-9158909 bp Ori: BAR62505.1 Feature: domain Description: DDE_Tnp_IS66 Location: 9158592-9158754 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9158592-9158754 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9158775-9158889 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9158775-9158889 bp Feature: gene Location: 9159924-9160226 bp Ori: BAR62506.1 Feature: domain Description: SAPR Location: 9159981-9160209 bp Feature: domain Description: SAPR Location: 9159981-9160209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, CitB (TIGR02484), DUF3309 (pfam11752), PRK14104 (chaperonin GroEL; Provisional), HTH_32 (pfam13565), DDE_3 (pfam13358), DDE_5 (pfam13546), GIIM (pfam08388), HTH_Tnp_1 (pfam01527), InsE (COG2963)
TnpB_IS66 (pfam05717), DDE_Tnp_1_2 (pfam13586), DUF4096 (pfam13340), COG3547 (Transposase ), COG5659 (SRSO17 transposase ), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1_4 (pfam13701), RVT-Retrons, CAP_ED (cl00047), HTH_Crp_2 (pfam13545)
MhpC (COG0596), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), Zn_ribbon_recom (pfam13408), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), SAPR (COG3947)