myRT

myRT report for GCA_001557535.2_ASM155753v2

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Seq: CP014311.1 Burkholderia sp. PAMC 26561 plasmid unnamed4, complete sequence (184640 bp)
Overview 1 RT 1: 156761-166028 bp Neighborhood of RT #1 [156761, 166028] TnpB_IS66 RVT-GII GIIM DUF5372 PinE Zn_ribbon_recom Recombinase RVT-GII Feature: gene Location: 156761-157114 bp Ori: AME28703.1 Feature: domain Description: TnpB_IS66 Location: 156788-157079 bp Feature: domain Description: TnpB_IS66 Location: 1 56788-1 57079 bp Feature: gene Location: 157081-157695 bp Feature: gene Location: 158732-159706 bp Ori: AME28737.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158738-159332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 58738-1 59332 bp Feature: domain Description: GIIM Note: maturase Location: 159398-159608 bp Feature: domain Description: GIIM Note: maturase Location: 1 59398-1 59608 bp Feature: gene Location: 159757-160053 bp Ori: AME28705.1 Feature: domain Description: DUF5372 Location: 159790-160021 bp Feature: domain Description: DUF5372 Location: 1 59790-1 60021 bp Feature: gene Location: 160106-160438 bp Feature: gene Location: 160575-162647 bp Ori: AME28706.1 Feature: domain Description: PinE Location: 160617-161298 bp Feature: domain Description: PinE Location: 1 6061 7-1 61 298 bp Feature: domain Description: Zn_ribbon_recom Location: 161571-161748 bp Feature: domain Description: Zn_ribbon_recom Location: 1 61 571 -1 61 748 bp Feature: domain Description: Recombinase Location: 162276-162393 bp Feature: domain Description: Recombinase Location: 1 62276-1 62393 bp Feature: gene Location: 162656-163033 bp Ori: AME28707.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162980-163025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 62980-1 63025 bp Feature: gene Location: 163993-165059 bp Feature: gene Location: 165711-166028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), RVT-GII, GIIM (pfam08388), DUF5372 (pfam17342), PinE (COG1961), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508)

Seq: CP014310.1 Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence (601076 bp)
Overview 1 RT 1: 84305-89797 bp 2 RT 2: 162969-170342 bp 3 RT 3: 325309-330530 bp 4 RT 4: 431041-435532 bp 5 RT 5: 490234-493860 bp 6 RT 6: 540667-545123 bp Neighborhood of RT #1 [84305, 89808] BKR_like_SDR_like RVT-GII HxlR Cupin_6 AraC Neighborhood of RT #2 [162969, 170342] DUF3800 MhpC RVT-GII GIIM Tra8 Neighborhood of RT #3 [325309, 330604] IclR IS5 RVT_N RVT-GII GIIM IS5 GIIM Neighborhood of RT #4 [431041, 435532] COG3547 IS5 RVT_N RVT-GII GIIM IS5 Neighborhood of RT #5 [490234, 494312] DUF5372 RVT-GII COG3547 AAA_22 Neighborhood of RT #6 [540667, 545143] MFS_MucK COG3473 RVT-GII COG5429 Feature: gene Location: 84305-84565 bp Feature: gene Location: 85726-86415 bp Feature: domain Description: BKR_like_SDR_like Location: 85735-86404 bp Feature: domain Description: BKR_like_SDR_like Location: 85735-86404 bp Feature: gene Location: 86469-88268 bp Ori: AME28522.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87183-87873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87183-87873 bp Feature: gene Location: 88504-88881 bp Ori: AME28145.1 Feature: domain Description: HxlR Location: 88591-88870 bp Feature: domain Description: HxlR Location: 88591-88870 bp Feature: gene Location: 88909-89808 bp Ori: AME28146.1 Feature: domain Description: Cupin_6 Location: 88915-89449 bp Feature: domain Description: Cupin_6 Location: 88915-89449 bp Feature: domain Description: AraC Location: 89476-89797 bp Feature: domain Description: AraC Location: 89476-89797 bp Feature: gene Location: 162969-163700 bp Ori: AME28204.1 Feature: domain Description: DUF3800 Location: 162990-163584 bp Feature: domain Description: DUF3800 Location: 162 990-163584 bp Feature: gene Location: 164387-165064 bp Ori: AME28205.1 Feature: domain Description: MhpC Location: 164474-165020 bp Feature: domain Description: MhpC Location: 164474-16502 0 bp Feature: gene Location: 165692-166945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165905-166562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165905-166562 bp Feature: domain Description: GIIM Note: maturase Location: 166640-166874 bp Feature: domain Description: GIIM Note: maturase Location: 166640-166874 bp Feature: gene Location: 167471-168264 bp Feature: domain Description: Tra8 Location: 167486-167927 bp Feature: domain Description: Tra8 Location: 167486-16792 7 bp Feature: gene Location: 169062-170342 bp Feature: gene Location: 325309-326001 bp Feature: domain Description: IclR Location: 325324-325963 bp Feature: domain Description: IclR Location: 32 532 4-32 5963 bp Feature: gene Location: 326168-326713 bp Feature: domain Description: IS5 Location: 326360-326711 bp Feature: domain Description: IS5 Location: 32 6360-32 6711 bp Feature: gene Location: 327321-328793 bp Ori: AME28537.1 Feature: domain Description: RVT_N Location: 327396-327633 bp Feature: domain Description: RVT_N Location: 32 7396-32 7633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327684-328326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 7684-32 832 6 bp Feature: domain Description: GIIM Note: maturase Location: 328377-328611 bp Feature: domain Description: GIIM Note: maturase Location: 32 8377-32 8611 bp Feature: gene Location: 328905-329354 bp Feature: domain Description: IS5 Location: 328914-329319 bp Feature: domain Description: IS5 Location: 32 8914-32 9319 bp Feature: gene Location: 330191-330604 bp Ori: AME28323.1 Feature: domain Description: GIIM Note: maturase Location: 330302-330530 bp Feature: domain Description: GIIM Note: maturase Location: 330302 -330530 bp Feature: gene Location: 431041-431994 bp Feature: domain Description: COG3547 Location: 431044-431926 bp Feature: domain Description: COG3547 Location: 431044-43192 6 bp Feature: gene Location: 432072-432605 bp Feature: domain Description: IS5 Location: 432249-432603 bp Feature: domain Description: IS5 Location: 432 2 49-432 603 bp Feature: gene Location: 433212-434684 bp Ori: AME28398.1 Feature: domain Description: RVT_N Location: 433287-433524 bp Feature: domain Description: RVT_N Location: 4332 87-43352 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433575-434217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 433575-4342 17 bp Feature: domain Description: GIIM Note: maturase Location: 434268-434502 bp Feature: domain Description: GIIM Note: maturase Location: 4342 68-434502 bp Feature: gene Location: 434796-435218 bp Feature: domain Description: IS5 Location: 434805-435201 bp Feature: domain Description: IS5 Location: 434805-4352 01 bp Feature: gene Location: 435245-435532 bp Feature: gene Location: 490234-490566 bp Feature: gene Location: 490619-490915 bp Ori: AME28432.1 Feature: domain Description: DUF5372 Location: 490652-490883 bp Feature: domain Description: DUF5372 Location: 490652 -490883 bp Feature: gene Location: 490930-491957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490933-491560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490933-491560 bp Feature: gene Location: 492243-493157 bp Ori: AME28433.1 Feature: domain Description: COG3547 Location: 492282-493098 bp Feature: domain Description: COG3547 Location: 492 2 82 -493098 bp Feature: gene Location: 493335-494312 bp Ori: AME28434.1 Feature: domain Description: AAA_22 Location: 493476-493860 bp Feature: domain Description: AAA_2 2 Location: 493476-493860 bp Feature: gene Location: 540667-542019 bp Feature: domain Description: MFS_MucK Location: 540751-541996 bp Feature: domain Description: MFS_MucK Location: 540751-541996 bp Feature: gene Location: 542305-543054 bp Ori: AME28469.1 Feature: domain Description: COG3473 Location: 542320-543046 bp Feature: domain Description: COG3473 Location: 542 32 0-543046 bp Feature: gene Location: 543200-543514 bp Ori: AME28470.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 543203-543443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5432 03-543443 bp Feature: gene Location: 543758-544093 bp Feature: gene Location: 544442-545143 bp Ori: AME28472.1 Feature: domain Description: COG5429 Location: 544496-545123 bp Feature: domain Description: COG542 9 Location: 544496-54512 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BKR_like_SDR_like (cd05344), RVT-GII, HxlR (pfam01638), Cupin_6 (pfam12852), AraC (COG2207), DUF3800 (pfam12686), MhpC (COG0596), GIIM (pfam08388), Tra8 (COG2826), IclR (pfam01614)
IS5 (COG3039), RVT_N (pfam13655), COG3547 (Transposase ), DUF5372 (pfam17342), AAA_22 (pfam13401), MFS_MucK (cd17371), COG3473 (Maleate cis-trans isomerase ), COG5429 (Uncharacterized protein )

Seq: CP014306.1 Burkholderia sp. PAMC 26561 chromosome 1, complete sequence (3397021 bp)
Overview 1 RT 1: 1578475-1586799 bp 2 RT 2: 2173705-2182370 bp Neighborhood of RT #1 [1578475, 1586837] PerM uvrA RVT_N RVT-GII GIIM HNH MFS_YajR_like Neighborhood of RT #2 [2173705, 2182405] fabG KOG4626 KOG4626 RVT_N RVT-GII GIIM HNH MFS_MefA_like PRK08898 Feature: gene Location: 1578475-1579548 bp Ori: AME23697.1 Feature: domain Description: PerM Location: 1578556-1579525 bp Feature: domain Description: PerM Location: 1578556-1579525 bp Feature: gene Location: 1579637-1582510 bp Ori: AME23698.1 Feature: domain Description: uvrA Location: 1579643-1582490 bp Feature: domain Description: uvrA Location: 1579643 -1582490 bp Feature: gene Location: 1583612-1585312 bp Ori: AME23699.1 Feature: domain Description: RVT_N Location: 1583669-1583912 bp Feature: domain Description: RVT_N Location: 1583 669-1583 912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1583957-1584605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1583 957-1584605 bp Feature: domain Description: GIIM Note: maturase Location: 1584659-1584890 bp Feature: domain Description: GIIM Note: maturase Location: 1584659-1584890 bp Feature: domain Description: HNH Note: nucleases Location: 1585142-1585277 bp Feature: domain Description: HNH Note: nucleases Location: 1585142-1585277 bp Feature: gene Location: 1585395-1585610 bp Feature: gene Location: 1585635-1586837 bp Ori: AME23701.1 Feature: domain Description: MFS_YajR_like Location: 1585701-1586799 bp Feature: domain Description: MFS_YajR_like Location: 1585701-1586799 bp Feature: gene Location: 2173705-2174481 bp Ori: AME24127.1 Feature: domain Description: fabG Location: 2173717-2174464 bp Feature: domain Description: fabG Location: 2173 717-2174464 bp Feature: gene Location: 2174542-2176578 bp Ori: AME24128.2 Feature: domain Description: KOG4626 Location: 2174632-2175142 bp Feature: domain Description: KOG4626 Location: 217463 2-2175142 bp Feature: domain Description: KOG4626 Location: 2175439-2176543 bp Feature: domain Description: KOG4626 Location: 217543 9-2176543 bp Feature: gene Location: 2177188-2178888 bp Ori: AME24130.1 Feature: domain Description: RVT_N Location: 2177245-2177488 bp Feature: domain Description: RVT_N Location: 2177245-2177488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2177533-2178181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 217753 3 -2178181 bp Feature: domain Description: GIIM Note: maturase Location: 2178235-2178466 bp Feature: domain Description: GIIM Note: maturase Location: 217823 5-2178466 bp Feature: domain Description: HNH Note: nucleases Location: 2178718-2178850 bp Feature: domain Description: HNH Note: nucleases Location: 2178718-2178850 bp Feature: gene Location: 2179937-2181127 bp Ori: AME24131.1 Feature: domain Description: MFS_MefA_like Location: 2179955-2181086 bp Feature: domain Description: MFS_MefA_like Location: 2179955-2181086 bp Feature: gene Location: 2181167-2182405 bp Ori: AME24132.1 Feature: domain Description: PRK08898 Location: 2181197-2182370 bp Feature: domain Description: PRK08898 Location: 2181197-21823 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PerM (COG0628), uvrA (PRK00349), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), MFS_YajR_like (cd17472), fabG (PRK12825), KOG4626 (KOG4626, O-linked N-acetylglucosamine transferase OGT ), MFS_MefA_like (cd06173)
PRK08898 (oxygen-independent coproporphyrinogen III oxidase-like protein)