myRT

myRT report for GCA_001559015.1_ASM155901v1

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Seq: CP012199.1 Sphingopyxis granuli strain TFA, complete genome (4679853 bp)
Overview 1 RT 1: 2050474-2059138 bp 2 RT 2: 2753789-2758037 bp 3 RT 3: 4375559-4384963 bp Neighborhood of RT #1 [2050474, 2059203] SIR2_2 Piwi_piwi-like_ProArk RVT-Retrons LbR_YadA-like YadA_head LbR_YadA-like YadA_head YadA_head LbR_YadA-like COG5495 Neighborhood of RT #2 [2753789, 2758255] DUF2958 ArdC RVT-GII Intron_maturas2 HNHc ArdC DUF736 Neighborhood of RT #3 [4375559, 4384963] TPR_12 TPR_12 TPR_12 TPR CHAT INT_Lambda_C RVT-Retrons Resolvase Recombinase Feature: gene Location: 2050474-2052357 bp Ori: AMG74263.1 Feature: domain Description: SIR2_2 Location: 2050885-2051272 bp Feature: domain Description: SIR2_2 Location: 2050885-2051 272 bp Feature: gene Location: 2052357-2053805 bp Ori: AMG74264.1 Feature: domain Description: Piwi_piwi-like_ProArk Location: 2052444-2053761 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 2052444-2053761 bp Feature: gene Location: 2053929-2055671 bp Ori: AMG74265.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2054064-2054694 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2054064-2054694 bp Feature: gene Location: 2056174-2058015 bp Ori: AMG74266.1 Feature: domain Description: LbR_YadA-like Location: 2056276-2056558 bp Feature: domain Description: LbR_YadA-like Location: 2056276-2056558 bp Feature: domain Description: YadA_head Location: 2056573-2056651 bp Feature: domain Description: YadA_head Location: 2056573-2056651 bp Feature: domain Description: LbR_YadA-like Location: 2056732-2057002 bp Feature: domain Description: LbR_YadA-like Location: 2056732-2057002 bp Feature: domain Description: YadA_head Location: 2057017-2057089 bp Feature: domain Description: YadA_head Location: 205701 7-2057089 bp Feature: domain Description: YadA_head Location: 2057110-2057176 bp Feature: domain Description: YadA_head Location: 20571 1 0-20571 76 bp Feature: domain Description: LbR_YadA-like Location: 2057197-2057554 bp Feature: domain Description: LbR_YadA-like Location: 20571 97-2057554 bp Feature: gene Location: 2058331-2059203 bp Ori: AMG74267.1 Feature: domain Description: COG5495 Location: 2058361-2059138 bp Feature: domain Description: COG5495 Location: 2058361 -20591 38 bp Feature: gene Location: 2753789-2754226 bp Ori: AMG74904.1 Feature: domain Description: DUF2958 Location: 2753798-2754137 bp Feature: domain Description: DUF2958 Location: 2753798-27541 37 bp Feature: gene Location: 2754223-2754504 bp Ori: AMG74905.1 Gene: ardC3 Feature: domain Description: ArdC Location: 2754301-2754496 bp Feature: domain Description: ArdC Location: 2754301 -2754496 bp Feature: gene Location: 2754501-2756357 bp Ori: AMG74906.1 Gene: ltrA1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2754768-2755599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2754768-2755599 bp Feature: domain Description: Intron_maturas2 Location: 2755680-2755971 bp Feature: domain Description: Intron_maturas2 Location: 2755680-2755971 bp Feature: domain Description: HNHc Note: nucleases Location: 2756118-2756289 bp Feature: domain Description: HNHc Note: nucleases Location: 27561 1 8-2756289 bp Feature: gene Location: 2756357-2757733 bp Ori: AMG74907.1 Gene: ardC4 Feature: domain Description: ArdC Location: 2756387-2757098 bp Feature: domain Description: ArdC Location: 2756387-2757098 bp Feature: gene Location: 2757803-2758255 bp Ori: AMG74908.1 Feature: domain Description: DUF736 Location: 2757812-2758037 bp Feature: domain Description: DUF736 Location: 275781 2-2758037 bp Feature: gene Location: 4375559-4378417 bp Ori: AMG76309.1 Feature: domain Description: TPR_12 Location: 4375937-4376147 bp Feature: domain Description: TPR_1 2 Location: 4375937-43761 47 bp Feature: domain Description: TPR_12 Location: 4376192-4376408 bp Feature: domain Description: TPR_1 2 Location: 43761 92-4376408 bp Feature: domain Description: TPR_12 Location: 4376438-4376636 bp Feature: domain Description: TPR_1 2 Location: 4376438-4376636 bp Feature: domain Description: TPR Location: 4376693-4377026 bp Feature: domain Description: TPR Location: 4376693-4377026 bp Feature: domain Description: CHAT Location: 4377524-4378403 bp Feature: domain Description: CHAT Location: 4377524-4378403 bp Feature: gene Location: 4378659-4379792 bp Ori: AMG76310.1 Feature: domain Description: INT_Lambda_C Location: 4379208-4379664 bp Feature: domain Description: INT_Lambda_C Location: 4379208-4379664 bp Feature: gene Location: 4381168-4382250 bp Ori: AMG76311.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4381315-4381885 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4381 31 5-4381 885 bp Feature: gene Location: 4382231-4382908 bp Ori: AMG76312.1 Gene: resU Feature: domain Description: Resolvase Location: 4382252-4382657 bp Feature: domain Description: Resolvase Location: 4382252-4382657 bp Feature: domain Description: Recombinase Location: 4382801-4382897 bp Feature: domain Description: Recombinase Location: 4382801 -4382897 bp Feature: gene Location: 4384805-4384963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SIR2_2 (pfam13289), Piwi_piwi-like_ProArk (cd04659), RVT-Retrons, LbR_YadA-like (cd12820), YadA_head (pfam05658), COG5495 (Predicted oxidoreductase, contains short-chain dehydrogenase (SDR) and DUF2520 domains ), DUF2958 (pfam11171), ArdC (COG4227), RVT-GII, Intron_maturas2 (pfam01348)
HNHc (smart00507), DUF736 (pfam05284), TPR_12 (pfam13424), TPR (smart00028), CHAT (pfam12770), INT_Lambda_C (cd00800), Resolvase (smart00857), Recombinase (pfam07508)