myRT

myRT report for GCA_001559115.2_ASM155911v2

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Seq: CP014016.2 Staphylococcus simulans strain FDAARGOS_124, complete genome (2647556 bp)
Overview 1 RT 1: 2082426-2090058 bp 2 RT 2: 2192659-2200837 bp Neighborhood of RT #1 [2082426, 2090087] PKc RVT-Retrons Trypsin_2 DUF262 DUF1524 Neighborhood of RT #2 [2192659, 2200887] zf-ribbon_3 YvbJ RVT-UG2 COG0610 Feature: gene Location: 2082426-2082719 bp Feature: gene Location: 2082940-2083611 bp Ori: AMG97160.1 Feature: domain Description: PKc Location: 2082958-2083576 bp Feature: domain Description: PKc Location: 2082958-2083576 bp Feature: gene Location: 2083899-2085683 bp Ori: AMG97161.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2084031-2084628 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2084031 -2084628 bp Feature: gene Location: 2086515-2088197 bp Ori: AMG97647.2 Feature: domain Description: Trypsin_2 Location: 2087619-2088093 bp Feature: domain Description: Trypsin_2 Location: 208761 9-2088093 bp Feature: gene Location: 2088399-2090087 bp Ori: AMG97162.1 Feature: domain Description: DUF262 Location: 2088450-2089092 bp Feature: domain Description: DUF262 Location: 2088450-2089092 bp Feature: domain Description: DUF1524 Location: 2089656-2090058 bp Feature: domain Description: DUF1 524 Location: 2089656-2090058 bp Feature: gene Location: 2192659-2193501 bp Ori: AMG97252.1 Feature: domain Description: zf-ribbon_3 Location: 2192665-2192731 bp Feature: domain Description: zf-ribbon_3 Location: 21 92665-21 92731 bp Feature: gene Location: 2193772-2194485 bp Ori: AMG97253.1 Feature: domain Description: YvbJ Location: 2193778-2194033 bp Feature: domain Description: YvbJ Location: 21 93778-21 94033 bp Feature: gene Location: 2194945-2196264 bp Ori: AMG97254.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2195113-2195932 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 21 951 1 3-21 95932 bp Feature: gene Location: 2196303-2198057 bp Feature: gene Location: 2198083-2200887 bp Ori: AMG97256.1 Feature: domain Description: COG0610 Location: 2198095-2200837 bp Feature: domain Description: COG061 0 Location: 21 98095-2200837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PKc (cd00180), RVT-Retrons, Trypsin_2 (pfam13365), DUF262 (pfam03235), DUF1524 (pfam07510), zf-ribbon_3 (pfam13248), YvbJ (COG4640), RVT-UG2, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )